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Mazur, M., Wojciechowska, D., Sitkiewicz, E., Malinowska, A., Świderska, B., Kmita, H., Wojtkowska, M. (2021) Mitochondrial Processes during Early Development of Dictyostelium discoideum: From Bioenergetic to Proteomic Studies. Genes 12, 638. doi:10.3390/genes12050638

Konopelski, P., Konop, M., Perlejewski, K., Bukowska-Osko, I., Radkowski, M., Onyszkiewicz, M., Jaworska, K., Mogilnicka, I., Samborowska, E., Ufnal, M. (2021) Genetically determined hypertensive phenotype affects gut microbiota composition, but not vice versa. Journal of Hypertension Publish Ahead of Print, doi:10.1097/hjh.0000000000002864

Perła-Kaján, J., Malinowska, A., Zimny, J., Cysewski, D., Suszyńska-Zajczyk, J., Jakubowski, H. (2021) Proteome-Wide Analysis of Protein Lysine N-Homocysteinylation in Saccharomyces cerevisiae. J. Proteome Res., doi:10.1021/acs.jproteome.0c00937

Gewartowska, O., Aranaz-Novaliches, G., Krawczyk, P. S., Mroczek, S., Kusio-Kobiałka, M., Tarkowski, B., Spoutil, F., Benada, O., Kofroňová, O., Szwedziak, P., Cysewski, D., Gruchota, J., Szpila, M., Chlebowski, A., Sedlacek, R., Prochazka, J., Dziembowski, A. (2021) Cytoplasmic polyadenylation by TENT5A is required for proper bone formation. Cell Reports 35, 109015. doi:10.1016/j.celrep.2021.109015

Moysa, A., Steczkiewicz, K., Niedzialek, D., Hammerschmid, D., Zhukova, L., Sobott, F., Dadlez, M. (2021) A model of full-length RAGE in complex with S100B. Structure, doi:10.1016/j.str.2021.04.002

Fatalska, A., Stepinac, E., Richter, M., Kovacs, L., Pietras, Z., Puchinger, M., Dong, G., Dadlez, M., Glover, D. M. (2021) The dimeric Golgi protein Gorab binds to Sas6 as a monomer to mediate centriole duplication. eLife 10, doi:10.7554/elife.57241

Łabuz, J., Sztatelman, O., Jagiełło-Flasińska, D., Hermanowicz, P., Bażant, A., Banaś, A. K., Bartnicki, F., Giza, A., Kozłowska, A., Lasok, H., Sitkiewicz, E., Krzeszowiec, W., Gabryś, H., Strzałka, W. (2021) Phototropin Interactions with SUMO Proteins. Plant and Cell Physiology, doi:10.1093/pcp/pcab027

Adamczyk, M., Lewicka, E., Szatkowska, R., Nieznanska, H., Ludwiczak, J., Jasiński, M., Dunin-Horkawicz, S., Sitkiewicz, E., Swiderska, B., Goch, G., Jagura-Burdzy, G. (2021) Revealing biophysical properties of KfrA-type proteins as a novel class of cytoskeletal, coiled-coil plasmid-encoded proteins. BMC Microbiol 21, doi:10.1186/s12866-020-02079-w

Olkowicz, M., Czyzynska-Cichon, I., Szupryczynska, N., Kostogrys, R. B., Kochan, Z., Debski, J., Dadlez, M., Chlopicki, S., Smolenski, R. T. (2021) Multi-omic signatures of atherogenic dyslipidaemia: pre-clinical target identification and validation in humans. J Transl Med 19, doi:10.1186/s12967-020-02663-8

Olkowicz, M., Tomczyk, M., Debski, J., Tyrankiewicz, U., Przyborowski, K., Borkowski, T., Zabielska-Kaczorowska, M., Szupryczynska, N., Kochan, Z., Smeda, M., Dadlez, M., Chlopicki, S., Smolenski, R. T. (2021) Enhanced cardiac hypoxic injury in atherogenic dyslipidaemia results from alterations in the energy metabolism pattern. Metabolism 114, 154400. doi:10.1016/j.metabol.2020.154400

Sikora, M., Stec, A., Chrabaszcz, M., Giebultowicz, J., Samborowska, E., Jazwiec, R., Dadlez, M., Olszewska, M., Rudnicka, L. (2021) Clinical Implications of Intestinal Barrier Damage in Psoriasis. JIR Volume 14, 237–243. doi:10.2147/jir.s292544

Bystranowska, D., Skorupska, A., Sołtys, K., Padjasek, M., Krężel, A., Żak, A., Kaus-Drobek, M., Taube, M., Kozak, M., Ożyhar, A. (2021) Nucleobindin-2 consists of two structural components: The Zn2+-sensitive N-terminal half, consisting of nesfatin-1 and -2, and the Ca2+-sensitive C-terminal half, consisting of nesfatin-3. Computational and Structural Biotechnology Journal 19, 4300–4318. doi:10.1016/j.csbj.2021.07.036

Fatalska, A., Rusetska, N., Bakuła-Zalewska, E., Kowalik, A., Zięba, S., Wroblewska, A., Zalewski, K., Goryca, K., Domański, D., Kowalewska, M. (2020) Inflammatory Proteins HMGA2 and PRTN3 as Drivers of Vulvar Squamous Cell Carcinoma Progression. Cancers 13, 27. doi:10.3390/cancers13010027

Karman, Z., Rethi-Nagy, Z., Abraham, E., Fabri-Ordogh, L., Csonka, A., Vilmos, P., Debski, J., Dadlez, M., Glover, D. M., Lipinszki, Z. (2020) Novel perspectives of target-binding by the evolutionarily conserved PP4 phosphatase. Open Biol. 10, 200343. doi:10.1098/rsob.200343

Fatalska, A., Dzhindzhev, N. S., Dadlez, M., Glover, D. M. (2020) Interaction interface in the C-terminal parts of centriole proteins Sas6 and Ana2. Open Biol. 10, 200221. doi:10.1098/rsob.200221

Karbownik, A., Miedziaszczyk, M., Grabowski, T., Stanisławiak-Rudowicz, J., Jaźwiec, R., Wolc, A., Grześkowiak, E., Szałek, E. (2020) In vivo assessment of potential for UGT-inhibition-based drug-drug interaction between sorafenib and tapentadol. Biomedicine & Pharmacotherapy 130, 110530. doi:10.1016/j.biopha.2020.110530

Zurawska, M., Basik, M., Dadlez, M., Domanski, D. (2020) Development of a multiplexed protein panel using a targeted proteomics approach for the study of CDK4/6 inhibitors resistance in hormone receptor positive breast cancer. European Journal of Cancer 138, S120. doi:10.1016/s0959-8049(20)30860-1

Zarzecka, U., Grinzato, A., Kandiah, E., Cysewski, D., Berto, P., Skorko-Glonek, J., Zanotti, G., Backert, S. (2020) Functional analysis and cryo-electron microscopy of Campylobacter jejuni serine protease HtrA. Gut Microbes 12, 1–16. doi:10.1080/19490976.2020.1810532

Witkiewicz-Kucharczyk, A., Goch, W., Olędzki, J., Hartwig, A., Bal, W. (2020) The Reactions of H2O2 and GSNO with the Zinc Finger Motif of XPA. Not A Regulatory Mechanism, But No Synergy with Cadmium Toxicity. Molecules 25, 4177. doi:10.3390/molecules25184177

Skrzypecki, J., Izdebska, J., Kamińska, A., Badowska, J., Przybek-Skrzypecka, J., Bombuy, J., Samborowska, E., Szaflik, J. P. (2020) Glaucoma patients have an increased level of trimethylamine, a toxic product of gut bacteria, in the aqueous humor: a pilot study. Int Ophthalmol, doi:10.1007/s10792-020-01587-y

Kociszewska-Najman, B., Mazanowska, N., Borek-Dzięcioł, B., Pączek, L., Samborowska, E., Szpotańska-Sikorska, M., Pietrzak, B., Dadlez, M., Wielgoś, M. (2020) Low Content of Cyclosporine A and Its Metabolites in the Colostrum of Post-Transplant Mothers. Nutrients 12, 2713. doi:10.3390/nu12092713

Drapala, A., Szudzik, M., Chabowski, D., Mogilnicka, I., Jaworska, K., Kraszewska, K., Samborowska, E., Ufnal, M. (2020) Heart Failure Disturbs Gut–Blood Barrier and Increases Plasma Trimethylamine, a Toxic Bacterial Metabolite. IJMS 21, 6161. doi:10.3390/ijms21176161

Niemiro, A., Cysewski, D., Brzywczy, J., Wawrzyńska, A., Sieńko, M., Poznański, J., Sirko, A. (2020) Similar but Not Identical—Binding Properties of LSU (Response to Low Sulfur) Proteins From Arabidopsis thaliana. Front. Plant Sci. 11, doi:10.3389/fpls.2020.01246

Bucholc, K., Skrajna, A., Adamska, K., Yang, X.-C., Krajewski, K., Poznański, J., Dadlez, M., Domiński, Z., Zhukov, I. (2020) Structural Analysis of the SANT/Myb Domain of FLASH and YARP Proteins and Their Complex with the C-Terminal Fragment of NPAT by NMR Spectroscopy and Computer Simulations. IJMS 21, 5268. doi:10.3390/ijms21155268

Skorupska, A., Bystranowska, D., Dąbrowska, K., Ożyhar, A. (2020) Calcium ions modulate the structure of the intrinsically disordered Nucleobindin-2 protein. International Journal of Biological Macromolecules 154, 1091–1104. doi:10.1016/j.ijbiomac.2020.03.110

Puchała, W., Burdukiewicz, M., Kistowski, M., Dąbrowska, K. A., Badaczewska-Dawid, A. E., Cysewski, D., Dadlez, M. (2020) HaDeX: an R package and web-server for analysis of data from hydrogen–deuterium exchange mass spectrometry experiments. Bioinformatics, doi:10.1093/bioinformatics/btaa587

Kuzniewska, B., Cysewski, D., Wasilewski, M., Sakowska, P., Milek, J., Kulinski, T. M., Winiarski, M., Kozielewicz, P., Knapska, E., Dadlez, M., Chacinska, A., Dziembowski, A., Dziembowska, M. (2020) Mitochondrial protein biogenesis in the synapse is supported by local translation. EMBO Rep, doi:10.15252/embr.201948882

Panda, P., Kovacs, L., Dzhindzhev, N., Fatalska, A., Persico, V., Geymonat, M., Riparbelli, M. G., Callaini, G., Glover, D. M. (2020) Tissue specific requirement of Drosophila Rcd4 for centriole duplication and ciliogenesis. Journal of Cell Biology 219, doi:10.1083/jcb.201912154

Gawrys-Kopczynska, M., Konop, M., Maksymiuk, K., Kraszewska, K., Derzsi, L., Sozanski, K., Holyst, R., Pilz, M., Samborowska, E., Dobrowolski, L., Jaworska, K., Mogilnicka, I., Ufnal, M. (2020) TMAO, a seafood-derived molecule, produces diuresis and reduces mortality in heart failure rats. eLife 9, doi:10.7554/elife.57028

Zegarska, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Jazwiec, R., Dadlez, M., Paczek, L. (2020) Higher Concentrations of Cyclosporine Metabolites in Liver Transplant Recipients With a History of Viral and Bacterial Infections. Transplantation Proceedings, doi:10.1016/j.transproceed.2020.03.039

Kopacz, A., Kloska, D., Targosz-Korecka, M., Zapotoczny, B., Cysewski, D., Personnic, N., Werner, E., Hajduk, K., Jozkowicz, A., Grochot-Przeczek, A. (2020) Keap1 governs ageing-induced protein aggregation in endothelial cells. Redox Biology, 101572. doi:10.1016/j.redox.2020.101572

Bałaban, J., Wierzbicki, M., Zielińska, M., Szczepaniak, J., Sosnowska, M., Daniluk, K., Cysewski, D., Koczoń, P., Chwalibog, A., Sawosz, E. (2020) Effects of Graphene Oxide Nanofilm and Chicken Embryo Muscle Extract on Muscle Progenitor Cell Differentiation and Contraction. Molecules 25, 1991. doi:10.3390/molecules25081991

Kaus‐Drobek, M., Mücke, N., Szczepanowski, R. H., Wedig, T., Czarnocki‐Cieciura, M., Polakowska, M., Herrmann, H., Wysłouch‐Cieszyńska, A., Dadlez, M. (2020) Vimentin S‐glutathionylation at Cys328 inhibits filament elongation and induces severing of mature filaments in vitro. FEBS J, doi:10.1111/febs.15321

Tarnowski, L., Collados Rodriguez, M., Brzywczy, J., Cysewski, D., Wawrzynska, A., Sirko, A. (2020) Overexpression of the Selective Autophagy Cargo Receptor NBR1 Modifies Plant Response to Sulfur Deficit. Cells 9, 669. doi:10.3390/cells9030669

Onyszkiewicz, M., Gawrys-Kopczynska, M., Sałagaj, M., Aleksandrowicz, M., Sawicka, A., Koźniewska, E., Samborowska, E., Ufnal, M. (2020) Valeric acid lowers arterial blood pressure in rats. European Journal of Pharmacology, 173086. doi:10.1016/j.ejphar.2020.173086

Pierzynowska, K., Woliński, J., Weström, B., Jazwiec, R., Shmigel, H., Pierzynowski, S. G. (2020) Absorption of Polyunsaturated Fatty Acid (PUFA) Is Related to IgG Blood Levels of Neonatal Pigs during the First 48 Hours Postpartum. Journal of Immunology Research 2020, 1–8. doi:10.1155/2020/3813250

Skrzypecki, J., Niewęgłowska, K., Samborowska, E. (2020) Valeric Acid, a Gut Microbiota Product, Penetrates to the Eye and Lowers Intraocular Pressure in Rats. Nutrients 12, 387. doi:10.3390/nu12020387

Kopacz, A., Klóska, D., Proniewski, B., Cysewski, D., Personnic, N., Piechota-Polańczyk, A., Kaczara, P., Zakrzewska, A., Forman, H. J., Dulak, J., Józkowicz, A., Grochot-Przęczek, A. (2020) Keap1 controls protein S-nitrosation and apoptosis-senescence switch in endothelial cells. Redox Biology 28, 101304. doi:10.1016/j.redox.2019.101304

Kluska, K., Peris-Díaz, M. D., Płonka, D., Moysa, A., Dadlez, M., Deniaud, A., Bal, W., Krężel, A. (2020) Formation of highly stable multinuclear AgnSn clusters in zinc fingers disrupts their structure and function. Chem. Commun. 56, 1329–1332. doi:10.1039/c9cc09418k

Bucholc, K., Aik, W. S., Yang, X.-. cui ., Wang, K., Zhou, Z. H., Dadlez, M., Marzluff, W. F., Tong, L., Dominski, Z. (2019) Composition and processing activity of a semi-recombinant holo U7 snRNP. Nucleic Acids Research 48, 1508–1530. doi:10.1093/nar/gkz1148

Moysa, A., Hammerschmid, D., Szczepanowski, R. H., Sobott, F., Dadlez, M. (2019) Enhanced oligomerization of full-length RAGE by synergy of the interaction of its domains. Sci Rep 9, doi:10.1038/s41598-019-56993-9

Onyszkiewicz, M., Gawrys-Kopczynska, M., Konopelski, P., Aleksandrowicz, M., Sawicka, A., Koźniewska, E., Samborowska, E., Ufnal, M. (2019) Butyric acid, a gut bacteria metabolite, lowers arterial blood pressure via colon-vagus nerve signaling and GPR41/43 receptors. Pflugers Arch - Eur J Physiol, doi:10.1007/s00424-019-02322-y

Tarnowski, K., Klimecka, M., Ciesielski, A., Goch, G., Kulik, A., Fedak, H., Poznański, J., Lichocka, M., Pierechod, M., Engh, R. A., Dadlez, M., Dobrowolska, G., Bucholc, M. (2019) Two SnRK2-Interacting Calcium Sensor Isoforms Negatively Regulate SnRK2 Activity by Different Mechanisms. Plant Physiol. 182, 1142–1160. doi:10.1104/pp.19.00900

Kolba, M. D., Dudka, W., Zaręba-Kozioł, M., Kominek, A., Ronchi, P., Turos, L., Chroscicki, P., Wlodarczyk, J., Schwab, Y., Klejman, A., Cysewski, D., Srpan, K., Davis, D. M., Piwocka, K. (2019) Tunneling nanotube-mediated intercellular vesicle and protein transfer in the stroma-provided imatinib resistance in chronic myeloid leukemia cells. Cell Death Dis 10, doi:10.1038/s41419-019-2045-8

Grzesiuk, M., Bednarska, A., Mielecki, D., Garbicz, D., Marcinkowski, M., Pilžys, T., Malinowska, A., Świderska, B., Grzesiuk, E. (2019) Anticancer agents found in environment affect Daphnia at population, individual and molecular levels. Aquatic Toxicology 215, 105288. doi:10.1016/j.aquatox.2019.105288

Bryk, A. H., Cysewski, D., Dadlez, M., Undas, A. (2019) Identification of glycated and acetylated lysine residues in human α2-antiplasmin. Biochemical and Biophysical Research Communications, doi:10.1016/j.bbrc.2019.09.144

Sulkowska, A., Auber, A., Sikorski, P. J., Silhavy, D., Auth, M., Sitkiewicz, E., Jean, V., Merret, R., Bousquet-Antonelli, C., Kufel, J. (2019) RNA Helicases from the DEA(D/H)-Box Family Contribute to Plant NMD Efficiency. Plant and Cell Physiology, doi:10.1093/pcp/pcz186

Hryniewiecka, E., Żegarska, J., Żochowska, D., Samborowska, E., Jaźwiec, R., Kosieradzki, M., Nazarewski, S., Dadlez, M., Pączek, L. (2019) Dose-adjusted and dose/kg-adjusted concentrations of mycophenolic acid precursors reflect metabolic ratios of their metabolites in contrast with tacrolimus and cyclosporine. Biosci. Rep. 39, BSR20182031. doi:10.1042/bsr20182031

Kulma, M., Dadlez, M., Kwiatkowska, K. (2019) Insight into the Structural Dynamics of the Lysenin During Prepore-to-Pore Transition Using Hydrogen–Deuterium Exchange Mass Spectrometry. Toxins 11, 462. doi:10.3390/toxins11080462

Przygońska, K., Pacewicz, M., Sadowska, W., Poznański, J., Bal, W., Dadlez, M. (2019) His6, His13, and His14 residues in Aβ 1–40 peptide significantly and specifically affect oligomeric equilibria. Sci Rep 9, doi:10.1038/s41598-019-45988-1

Kotrys, A. V., Cysewski, D., Czarnomska, S. D., Pietras, Z., Borowski, L. S., Dziembowski, A., Szczesny, R. J. (2019) Quantitative proteomics revealed C6orf203/MTRES1 as a factor preventing stress-induced transcription deficiency in human mitochondria. Nucleic Acids Research, doi:10.1093/nar/gkz542

Samulak, J. J., Sawicka, A. K., Samborowska, E., Olek, R. A. (2019) Plasma Trimethylamine-N-oxide following Cessation of L-carnitine Supplementation in Healthy Aged Women. Nutrients 11, 1322. doi:10.3390/nu11061322

GODLEWSKA, R., KLIM, J., DĘBSKI, J., WYSZYŃSKA, A., ŁASICA, A. (2019) Influence of Environmental and Genetic Factors on Proteomic Profiling of Outer Membrane Vesicles from Campylobacter jejuni. Pol J Microbiol 68, 255–261. doi:10.33073/pjm-2019-027

Lebecka, R., Kistowski, M., Dębski, J., Szajko, K., Murawska, Z., Marczewski, W. (2019) Quantitative proteomic analysis of differentially expressed proteins in tubers of potato plants differing in resistance to Dickeya solani. Plant and Soil, doi:10.1007/s11104-019-04125-7

Skierka, K., Wilamowski, P., Wielechowska, M., Cysewski, D., Senkara, E., Wińska, P., Bretner, M., Cieśla, J. (2019) Human dihydrofolate reductase is a substrate of protein kinase CK2α. Biochemical and Biophysical Research Communications 513, 368–373. doi:10.1016/j.bbrc.2019.03.186

Bondarchuk, T. V., Lozhko, D. M., Shalak, V. F., Fatalska, A., Szczepanowski, R. H., Dadlez, M., Negrutskii, B. S., El'skaya, A. V. (2019) The protein-binding N-terminal domain of human translation elongation factor 1Bβ possesses a dynamic α-helical structural organization. International Journal of Biological Macromolecules 126, 899–907. doi:10.1016/j.ijbiomac.2018.12.220

Jasiecki, J., Limon-Sztencel, A., Żuk, M., Chmara, M., Cysewski, D., Limon, J., Wasąg, B. (2019) Synergy between the alteration in the N-terminal region of butyrylcholinesterase K variant and apolipoprotein E4 in late-onset Alzheimer’s disease. Sci Rep 9, doi:10.1038/s41598-019-41578-3

Mohanraj, K., Wasilewski, M., Benincá, C., Cysewski, D., Poznanski, J., Sakowska, P., Bugajska, Z., Deckers, M., Dennerlein, S., Fernandez‐Vizarra, E., Rehling, P., Dadlez, M., Zeviani, M., Chacinska, A. (2019) Inhibition of proteasome rescues a pathogenic variant of respiratory chain assembly factor COA7. EMBO Mol Med. 11, e9561. doi:10.15252/emmm.201809561

Stadnicka, K., Dębowska, M., Dębski, J., Bajek, A. (2019) Secreting oviduct epithelial cells of Coturnix coturnix japonica (QOEC) and changes to their proteome after nonviral transfection. J Cell Biochem 120, 12724–12739. doi:10.1002/jcb.28541

Borkiewicz, L., Polkowska-Kowalczyk, L., Cieśla, J., Sowiński, P., Jończyk, M., Rymaszewski, W., Szymańska, K. P., Jaźwiec, R., Muszyńska, G., Szczegielniak, J. (2019) Expression of maize calcium-dependent protein kinase (ZmCPK11) improves salt tolerance in transgenic Arabidopsis plants by regulating sodium and potassium homeostasis and stabilizing photosystem II. Physiol Plantarum, doi:10.1111/ppl.12938

Głowacka-Rutkowska, A., Gozdek, A., Empel, J., Gawor, J., Żuchniewicz, K., Kozińska, A., Dębski, J., Gromadka, R., Łobocka, M. (2019) The Ability of Lytic Staphylococcal Podovirus vB_SauP_phiAGO1.3 to Coexist in Equilibrium With Its Host Facilitates the Selection of Host Mutants of Attenuated Virulence but Does Not Preclude the Phage Antistaphylococcal Activity in a Nematode Infection Model. Front. Microbiol. 9, doi:10.3389/fmicb.2018.03227

Kuncewicz, K., Spodzieja, M., Sieradzan, A., Karczyńska, A., Dąbrowska, K., Dadlez, M., Speiser, D. E., Derre, L., Rodziewicz-Motowidło, S. (2019) A structural model of the immune checkpoint CD160–HVEM complex derived from HDX-mass spectrometry and molecular modeling. Oncotarget 10, doi:10.18632/oncotarget.26570

Kulma, M., Kacprzyk-Stokowiec, A., Traczyk, G., Kwiatkowska, K., Dadlez, M. (2019) Fine-tuning of the stability of β-strands by Y181 in perfringolysin O directs the prepore to pore transition. Biochimica et Biophysica Acta (BBA) - Biomembranes 1861, 110–122. doi:10.1016/j.bbamem.2018.08.008

Paziewska, A., Polkowski, M., Rubel, T., Karczmarski, J., Wiechowska-Kozlowska, A., Dabrowska, M., Mikula, M., Dadlez, M., Ostrowski, J. (2018) Mass Spectrometry-Based Comprehensive Analysis of Pancreatic Cyst Fluids. BioMed Research International 2018, 1–12. doi:10.1155/2018/7169595

Hryniewiecka, E., Żegarska, J., Żochowska, D., Samborowska, E., Jaźwiec, R., Kosieradzki, M., Nazarewski, S., Dadlez, M., Pączek, L. (2018) Cyclosporine Metabolites’ Metabolic Ratios May Be Markers of Cardiovascular Disease in Kidney Transplant Recipients Treated with Cyclosporine A-Based Immunosuppression Regimens. Cardiovasc Toxicol, doi:10.1007/s12012-018-9492-9

Jaworska, K., Huc, T., Gawrys, M., Onyszkiewicz, M., Samborowska, E., Ufnal, M. (2018) An In Vivo Method for Evaluating the Gut-Blood Barrier and Liver Metabolism of Microbiota Products. JoVE, doi:10.3791/58456

Maszkowska, J., Dębski, J., Kulik, A., Kistowski, M., Bucholc, M., Lichocka, M., Klimecka, M., Sztatelman, O., Szymańska, K. P., Dadlez, M., Dobrowolska, G. (2018) Phosphoproteomic Analysis Reveals that Dehydrins ERD10 and ERD14 are Phosphorylated by SNF1-related Protein Kinase 2.10 in Response to Osmotic Stress. Plant Cell Environ, doi:10.1111/pce.13465

Huc, T., Drapala, A., Gawrys, M., Konop, M., Bielinska, K., Zaorska, E., Samborowska, E., Wyczalkowska-Tomasik, A., Pączek, L., Dadlez, M., Ufnal, M. (2018) CHRONIC, LOW-DOSE TMAO TREATMENT REDUCES DIASTOLIC DYSFUNCTION AND HEART FIBROSIS IN HYPERTENSIVE RATS.. American Journal of Physiology-Heart and Circulatory Physiology, doi:10.1152/ajpheart.00536.2018

Pietras, Z., Wojcik, M. A., Borowski, L. S., Szewczyk, M., Kulinski, T. M., Cysewski, D., Stepien, P. P., Dziembowski, A., Szczesny, R. J. (2018) Controlling the mitochondrial antisense – role of the SUV3-PNPase complex and its co-factor GRSF1 in mitochondrial RNA surveillance. Molecular & Cellular Oncology 5, e1516452. doi:10.1080/23723556.2018.1516452

Klóska, D., Kopacz, A., Cysewski, D., Aepfelbacher, M., Dulak, J., Jozkowicz, A., Grochot-Przeczek, A. (2018) Nrf2 sequesters Keap1 preventing podosome disassembly: a quintessential duet moonlights in endothelium. Antioxidants & Redox Signaling, doi:10.1089/ars.2018.7505

Czarnecka, A., Aleksandrowicz, M., Jasiński, K., Jaźwiec, R., Kalita, K., Hilgier, W., Zielińska, M. (2018) Cerebrovascular reactivity and cerebral perfusion of rats with acute liver failure: role of L-glutamine and asymmetric dimethylarginine in L-arginine-induced response. J. Neurochem., doi:10.1111/jnc.14578

Przygońska, K., Poznański, J., Mistarz, U. H., Rand, K. D., Dadlez, M. (2018) Side-chain moieties from the N-terminal region of Aβ are Involved in an oligomer-stabilizing network of interactions. PLoS ONE 13, e0201761. doi:10.1371/journal.pone.0201761

Grzeszczuk, M. J., Bocian-Ostrzycka, K. M., Banaś, A. M., Roszczenko-Jasinska, P., Malinowska, A., Stralova, H., Haas, R., Meyer, T. F., Jagusztyn-Krynicka, E. K. (2018) Thioloxidoreductase HP0231 of Helicobacter pylori impacts HopQ-dependent CagA translocation. International Journal of Medical Microbiology, doi:10.1016/j.ijmm.2018.08.002

Garbicz, D., Mielecki, D., Wrzesinski, M., Pilzys, T., Marcinkowski, M., Piwowarski, J., Debski, J., Palak, E., Szczecinski, P., Krawczyk, H., Grzesiuk, E. (2018) Evaluation of Anti-cancer Activity of Stilbene and Methoxydibenzo[b,f] oxepin Derivatives. CCDT 18, 706–717. doi:10.2174/1568009617666170623120742

Chlebowska-Tuz, J., Sokolowska, O., Gaj, P., Lazniewski, M., Firczuk, M., Borowiec, K., Sas-Nowosielska, H., Bajor, M., Malinowska, A., Muchowicz, A., Ramji, K., Stawinski, P., Sobczak, M., Pilch, Z., Rodziewicz-Lurzynska, A., Zajac, M., Giannopoulos, K., Juszczynski, P., Basak, G. W., Plewczynski, D., Ploski, R., Golab, J., Nowis, D. (2018) Inhibition of protein disulfide isomerase induces differentiation of acute myeloid leukemia cells. Haematologica 103, 1843–1852. doi:10.3324/haematol.2018.190231

Pietras, Z., Wojcik, M. A., Borowski, L. S., Szewczyk, M., Kulinski, T. M., Cysewski, D., Stepien, P. P., Dziembowski, A., Szczesny, R. J. (2018) Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria. Nat Commun 9, doi:10.1038/s41467-018-05007-9

Hryniewiecka, E., Zegarska, J., Zochowska, D., Samborowska, E., Jazwiec, R., Kosieradzki, M., Nazarewski, S., Dadlez, M., Paczek, L. (2018) Cardiovascular Disease in Kidney Transplantation and Its Association With Blood Concentrations of Cyclosporine and Cyclosporine Metabolites. Transplantation Proceedings 50, 1850–1854. doi:10.1016/j.transproceed.2018.03.115

Heidorn-Czarna, M., Domanski, D., Kwasniak-Owczarek, M., Janska, H. (2018) Targeted Proteomics Approach Toward Understanding the Role of the Mitochondrial Protease FTSH4 in the Biogenesis of OXPHOS During Arabidopsis Seed Germination. Front. Plant Sci. 9, doi:10.3389/fpls.2018.00821

Wycisk, K., Tarczewska, A., Kaus-Drobek, M., Dadlez, M., Hołubowicz, R., Pietras, Z., Dziembowski, A., Taube, M., Kozak, M., Orłowski, M., Ożyhar, A. (2018) Intrinsically disordered N-terminal domain of the Helicoverpa armigera Ultraspiracle stabilizes the dimeric form via a scorpion-like structure. The Journal of Steroid Biochemistry and Molecular Biology, doi:10.1016/j.jsbmb.2018.06.011

Hareza, A., Bakun, M., Świderska, B., Dudkiewicz, M., Koscielny, A., Bajur, A., Jaworski, J., Dadlez, M., Pawłowski, K. (2018) Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58. PeerJ 6, e4599. doi:10.7717/peerj.4599

Kopacz, A., Kloska, D., Cysewski, D., Dulak, J., Jozkowicz, A., Grochot-Przeczek, A. (2018) P357Nrf2 sequesters Keap1 preventing endothelial dysfunction. Cardiovascular Research 114, S92–S92. doi:10.1093/cvr/cvy060.269

Lisowska-Myjak, B., Skarżyńska, E., Bakun, M. (2018) Meconium proteins as a source of biomarkers for the assessment of the intrauterine environment of the fetus. J Dev Orig Health Dis, 1–9. doi:10.1017/s2040174418000028

Zegarska, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Jazwiec, R., Maciej, K., Nazarewski, S., Dadlez, M., Paczek, L. (2018) Evaluation of the relationship between concentrations of tacrolimus metabolites, 13-O-demethyl tacrolimus and 15-O-demethyl tacrolimus, and clinical and biochemical parameters in kidney transplant recipients. Transplantation Proceedings, doi:10.1016/j.transproceed.2018.03.025

Kociszewska-Najman, B., Mazanowska, N., Pietrzak, B., Paczek, L., Szpotanska-Sikorska, M., Schreiber-Zamora, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Dadlez, M., Wielgos, M. (2018) Low Transfer of Tacrolimus and Its Metabolites into Colostrum of Graft Recipient Mothers. Nutrients 10, 267. doi:10.3390/nu10030267

Skrajna, A., Yang, X.-. cui ., Dadlez, M., Marzluff, W. F., Dominski, Z. (2018) Protein composition of catalytically active U7-dependent processing complexes assembled on histone pre-mRNA containing biotin and a photo-cleavable linker. Nucleic Acids Research 46, 4752–4770. doi:10.1093/nar/gky133

Konop, M., Radkowski, M., Grochowska, M., Perlejewski, K., Samborowska, E., Ufnal, M. (2018) Enalapril decreases rat plasma concentration of TMAO, a gut bacteria-derived cardiovascular marker. Biomarkers, 1–6. doi:10.1080/1354750x.2018.1432689

Perzanowska, A., Fatalska, A., Wojtas, G., Lewandowicz, A., Michalak, A., Krasowski, G., Borchers, C. H., Dadlez, M., Domanski, D. (2018) An MRM-Based Cytokeratin Marker Assay as a Tool for Cancer Studies: Application to Lung Cancer Pleural Effusions. Prot. Clin. Appl. 12, 1700084. doi:10.1002/prca.201700084

Drabikowski, K., Ferralli, J., Kistowski, M., Oledzki, J., Dadlez, M., Chiquet-Ehrismann, R. (2018) Comprehensive list of SUMO targets in Caenorhabditis elegans and its implication for evolutionary conservation of SUMO signaling. Sci Rep 8, doi:10.1038/s41598-018-19424-9

Przanowski, P., Loska, S., Cysewski, D., Dabrowski, M., Kaminska, B. (2018) ISG'ylation increases stability of numerous proteins including Stat1, which prevents premature termination of immune response in LPS-stimulated microglia. Neurochemistry International 112, 227–233. doi:10.1016/j.neuint.2017.07.013

Kazazić, S., Karačić, Z., Sabljić, I., Agić, D., Tomin, M., Abramić, M., Dadlez, M., Tomić, A., Tomić, S. (2018) Conservation of the conformational dynamics and ligand binding within M49 enzyme family. RSC Adv. 8, 13310–13322. doi:10.1039/c7ra13059g

Kociszewska-Najman, B., Szpotańska-Sikorska, M., Mazanowska, N., Pączek, L., Samborowska, E., Dadlez, M., Wielgoś, M., Pietrzak, B. (2017) Transfer of Everolimus into Colostrum of a Kidney Transplant Mother. Ann Transplant 22, 755–758. doi:10.12659/aot.907944

Jaworska, K., Huc, T., Samborowska, E., Dobrowolski, L., Bielinska, K., Gawlak, M., Ufnal, M. (2017) Hypertension in rats is associated with an increased permeability of the colon to TMA, a gut bacteria metabolite. PLoS ONE 12, e0189310. doi:10.1371/journal.pone.0189310

Dzhindzhev, N. S., Tzolovsky, G., Lipinszki, Z., Abdelaziz, M., Debski, J., Dadlez, M., Glover, D. M. (2017) Two-step phosphorylation of Ana2 by Plk4 is required for the sequential loading of Ana2 and Sas6 to initiate procentriole formation. Open Biol. 7, 170247. doi:10.1098/rsob.170247

Bielecka, Z. F., Malinowska, A., Brodaczewska, K. K., Klemba, A., Kieda, C., Krasowski, P., Grzesiuk, E., Piwowarski, J., Czarnecka, A. M., Szczylik, C. (2017) Hypoxic 3D in vitro culture models reveal distinct resistance processes to TKIs in renal cancer cells. Cell Biosci 7, doi:10.1186/s13578-017-0197-8

Librizzi, M., Caradonna, F., Cruciata, I., Dębski, J., Sansook, S., Dadlez, M., Spencer, J., Luparello, C. (2017) Molecular Signatures Associated with Treatment of Triple-Negative MDA-MB231 Breast Cancer Cells with Histone Deacetylase Inhibitors JAHA and SAHA. Chem. Res. Toxicol. 30, 2187–2196. doi:10.1021/acs.chemrestox.7b00269

Milewski, K., Bogacińska-Karaś, M., Fręśko, I., Hilgier, W., Jaźwiec, R., Albrecht, J., Zielińska, M. (2017) Ammonia Reduces Intracellular Asymmetric Dimethylarginine in Cultured Astrocytes Stimulating Its y+LAT2 Carrier-Mediated Loss. IJMS 18, 2308. doi:10.3390/ijms18112308

Cieplak-Rotowska, M. K., Tarnowski, K., Rubin, M., Fabian, M. R., Sonenberg, N., Dadlez, M., Niedzwiecka, A. (2017) Structural Dynamics of the GW182 Silencing Domain Including its RNA Recognition motif (RRM) Revealed by Hydrogen-Deuterium Exchange Mass Spectrometry. J. Am. Soc. Mass Spectrom. 29, 158–173. doi:10.1007/s13361-017-1830-9

Schmitzberger, F., Richter, M. M., Gordiyenko, Y., Robinson, C. V., Dadlez, M., Westermann, S. (2017) Molecular basis for inner kinetochore configuration through RWD domain–peptide interactions. EMBO J., e201796636. doi:10.15252/embj.201796636

Mroczek, S., Chlebowska, J., Kuliński, T. M., Gewartowska, O., Gruchota, J., Cysewski, D., Liudkovska, V., Borsuk, E., Nowis, D., Dziembowski, A. (2017) The non-canonical poly(A) polymerase FAM46C acts as an onco-suppressor in multiple myeloma. Nat Commun 8, doi:10.1038/s41467-017-00578-5

Olkowicz, M., Debski, J., Jablonska, P., Dadlez, M., Smolenski, R. T. (2017) Application of a new procedure for liquid chromatography/mass spectrometry profiling of plasma amino acid-related metabolites and untargeted shotgun proteomics to identify mechanisms and biomarkers of calcific aortic stenosis. Journal of Chromatography A 1517, 66–78. doi:10.1016/j.chroma.2017.08.024

Bobrowicz, M., Dwojak, M., Pyrzynska, B., Stachura, J., Muchowicz, A., Berthel, E., Dalla Venezia, N., Kozikowski, M., Siernicka, M., Miazek, N., Zapala, P., Domagala, A., Bojarczuk, K., Malenda, A., Barankiewicz, J., Graczyk-Jarzynka, A., Zagozdzon, A., Gabrysiak, M., Diaz, J.-J., Karp, M., Lech-Maranda, E., Firczuk, M., Giannopoulos, K., Efremov, D. G., Laurenti, L., Baatout, D., Frenzel, L., Malinowska, A., Slabicki, M., Zenz, T., Zerrouqi, A., Golab, J., Winiarska, M. (2017) HDAC6 inhibition up-regulates CD20 levels and increases the efficacy of anti-CD20 monoclonal antibodies. Blood, doi:10.1182/blood-2016-08-736066

Gozdz, A., Nikolaienko, O., Urbanska, M., Cymerman, I. A., Sitkiewicz, E., Blazejczyk, M., Dadlez, M., Bramham, C. R., Jaworski, J. (2017) GSK3α and GSK3β Phosphorylate Arc and Regulate its Degradation. Front. Mol. Neurosci. 10, doi:10.3389/fnmol.2017.00192

Skrajna, A., Yang, X.-. cui ., Bucholc, K., Zhang, J., Hall, T. M. T., Dadlez, M., Marzluff, W. F., Dominski, Z. (2017) U7 snRNP is recruited to histone pre-mRNA in a FLASH-dependent manner by two separate regions of the stem–loop binding protein. RNA 23, 938–951. doi:10.1261/rna.060806.117

Kulma, M., Kacprzyk-Stokowiec, A., Kwiatkowska, K., Traczyk, G., Sobota, A., Dadlez, M. (2017) R468A mutation in perfringolysin O destabilizes toxin structure and induces membrane fusion. Biochimica et Biophysica Acta (BBA) - Biomembranes, doi:10.1016/j.bbamem.2017.03.001

Krol, K., Jendrysek, J., Debski, J., Skoneczny, M., Kurlandzka, A., Kaminska, J., Dadlez, M., Skoneczna, A. (2017) Ribosomal DNA status inferred from DNA cloud assays and mass spectrometry identification of agarose-squeezed proteins interacting with chromatin (ASPIC-MS). Oncotarget, doi:10.18632/oncotarget.15332

Premchandar, A., Kupniewska, A., Bonna, A., Faure, G., Fraczyk, T., Roldan, A., Hoffmann, B., Faria da Cunha, M., Herrmann, H., Lukacs, G. L., Edelman, A., Dadlez, M. (2017) New insights into interactions between the nucleotide-binding domain of CFTR and keratin 8. Protein Science 26, 343–354. doi:10.1002/pro.3086

Jakubowski, M., Dębski, J., Szahidewicz-Krupska, E., Turek-Jakubowska, A., Gawryś, J., Gawryś, K., Skomro, R., Derkacz, A., Doroszko, A. (2017) Platelet Carbonic Anhydrase II, a Forgotten Enzyme, May Be Responsible for Aspirin Resistance. Oxidative Medicine and Cellular Longevity 2017, 1–8. doi:10.1155/2017/3132063

Ambroziak, U., Kuryłowicz, A., Kępczyńska-Nyk, A., Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Samborowska, E., Dadlez, M., Wysłouch-Cieszyńska, A., Bednarczuk, T. (2017) Total testosterone to dihydrotestosterone ratio assessed by LC-MS/MS predicts a worse metabolic profile not only in PCOS patients.. Ginekologia polska 88, 5–8. doi:10.5603/GP.a2017.0001

Stasiak, M., Sitkiewicz, E., Gawrys, K., Szemraj, J., Popielarski, M., Swiatkowska, M., Bednarek, R., Studzian, M. (2017) Differential Quantitative Proteomics of Human Microvascular Endothelial Cells 1 by iTRAQ Reveals Palladin to be a New Biomarker During TGF-β1 Induced Endothelial Mesenchymal Transition. J Proteomics Bioinform 10, doi:10.4172/jpb.1000447

Kistowski, M., Dębski, J., Karczmarski, J., Paziewska, A., Olędzki, J., Mikula, M., Ostrowski, J., Dadlez, M. (2016) A Strong Neutrophil Elastase Proteolytic Fingerprint Marks the Carcinoma Tumor Proteome. Molecular & Cellular Proteomics 16, 213–227. doi:10.1074/mcp.m116.058818

Podszywalow-Bartnicka, P., Cmoch, A., Wolczyk, M., Bugajski, L., Tkaczyk, M., Dadlez, M., Nieborowska-Skorska, M., Koromilas, A. E., Skorski, T., Piwocka, K. (2016) Increased phosphorylation of eIF2α in chronic myeloid leukemia cells stimulates secretion of matrix modifying enzymes. Oncotarget, doi:10.18632/oncotarget.12941

Domanski, D., Zegrocka-Stendel, O., Perzanowska, A., Dutkiewicz, M., Kowalewska, M., Grabowska, I., Maciejko, D., Fogtman, A., Dadlez, M., Koziak, K. (2016) Molecular Mechanism for Cellular Response to β-Escin and Its Therapeutic Implications. PLOS ONE 11, e0164365. doi:10.1371/journal.pone.0164365

Premchandar, A., Mücke, N., Poznański, J., Wedig, T., Kaus-Drobek, M., Herrmann, H., Dadlez, M. (2016) Structural Dynamics of the Vimentin Coiled-Coil Contact Regions involved in Filament Assembly as revealed by Hydrogen-Deuterium Exchange. Journal of Biological Chemistry, jbc.M116.748145. doi:10.1074/jbc.m116.748145

Kalisiak, K., Kuliński, T. M., Tomecki, R., Cysewski, D., Pietras, Z., Chlebowski, A., Kowalska, K., Dziembowski, A. (2016) A short splicing isoform of HBS1L links the cytoplasmic exosome and SKI complexes in humans. Nucleic Acids Res, gkw862. doi:10.1093/nar/gkw862

Czarnecka, A., Milewski, K., Jaźwiec, R., Zielińska, M. (2016) Intracerebral Administration of S-Adenosylhomocysteine or S-Adenosylmethionine Attenuates the Increases in the Cortical Extracellular Levels of Dimethylarginines Without Affecting cGMP Level in Rats with Acute Liver Failure. Neurotoxicity Research 31, 99–108. doi:10.1007/s12640-016-9668-7

Per a-Kajan, J., Utyro, O., Rusek, M., Malinowska, A., Sitkiewicz, E., Jakubowski, H. (2016) N-Homocysteinylation impairs collagen cross-linking in cystathionine  -synthase-deficient mice: a novel mechanism of connective tissue abnormalities. The FASEB Journal 30, 3810–3821. doi:10.1096/fj.201600539

Buszewicz, D., Archacki, R., Palusiński, A., Kotliński, M., Fogtman, A., Iwanicka-Nowicka, R., Sosnowska, K., Kuciński, J., Pupel, P., Olędzki, J., Dadlez, M., Misicka, A., Jerzmanowski, A., Koblowska, M. K. (2016) HD2C histone deacetylase and a SWI/SNF chromatin remodelling complex interact and both are involved in mediating the heat stress response in Arabidopsis . Plant, Cell & Environment 39, 2108–2122. doi:10.1111/pce.12756

Domanski, D., Perzanowska, A., Kistowski, M., Wojtas, G., Michalak, A., Krasowski, G., Dadlez, M. (2016) A Multiplexed Cytokeratin Analysis Using Targeted Mass Spectrometry Reveals Specific Profiles in Cancer-Related Pleural Effusions. Neoplasia 18, 399–412. doi:10.1016/j.neo.2016.06.002

Faure, G., Bakouh, N., Lourdel, S., Odolczyk, N., Premchandar, A., Servel, N., Hatton, A., Ostrowski, M. K., Xu, H., Saul, F. A., Moquereau, C., Bitam, S., Pranke, I., Planelles, G., Teulon, J., Herrmann, H., Roldan, A., Zielenkiewicz, P., Dadlez, M., Lukacs, G. L., Sermet-Gaudelus, I., Ollero, M., Corringer, P.-J., Edelman, A. (2016) Rattlesnake Phospholipase A2 Increases CFTR-Chloride Channel Current and Corrects ∆F508CFTR Dysfunction: Impact in Cystic Fibrosis. Journal of Molecular Biology 428, 2898–2915. doi:10.1016/j.jmb.2016.05.016

Krzywińska, E., Bucholc, M., Kulik, A., Ciesielski, A., Lichocka, M., Dębski, J., Ludwików, A., Dadlez, M., Rodriguez, P. L., Dobrowolska, G. (2016) Phosphatase ABI1 and okadaic acid-sensitive phosphoprotein phosphatases inhibit salt stress-activated SnRK2.4 kinase. BMC Plant Biol 16, doi:10.1186/s12870-016-0817-1

Zegarska, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Jazwiec, R., Borowiec, A., Tszyrsznic, W., Chmura, A., Nazarewski, S., Dadlez, M., Paczek, L. (2016) Tacrolimus Metabolite M-III May Have Nephrotoxic and Myelotoxic Effects and Increase the Incidence of Infections in Kidney Transplant Recipients. Transplantation Proceedings 48, 1539–1542. doi:10.1016/j.transproceed.2015.12.133

Hryniewiecka, E., Żegarska, J., Żochowska, D., Jaźwiec, R., Borowiec, A., Samborowska, E., Tszyrsznic, W., Dadlez, M., Pączek, L. (2016) Hydroxylated, Hydroxymethylated, Dihydroxylated, and Trihydroxylated Cyclosporine Metabolites Can Be Nephrotoxic in Kidney Transplant Recipients. Transplantation Proceedings 48, 1551–1555. doi:10.1016/j.transproceed.2016.01.090

Zochowska, D., Zegarska, J., Hryniewiecka, E., Samborowska, E., Jazwiec, R., Tszyrsznic, W., Borowiec, A., Dadlez, M., Paczek, L. (2016) Determination of Concentrations of Azathioprine Metabolites 6-Thioguanine and 6-Methylmercaptopurine in Whole Blood With the Use of Liquid Chromatography Combined With Mass Spectrometry. Transplantation Proceedings 48, 1836–1839. doi:10.1016/j.transproceed.2016.01.084

Slomnicki, L. P., Malinowska, A., Kistowski, M., Palusinski, A., Zheng, J.-J., Sepp, M., Timmusk, T., Dadlez, M., Hetman, M. (2016) Nucleolar Enrichment of Brain Proteins with Critical Roles in Human Neurodevelopment. Mol Cell Proteomics 15, 2055–2075. doi:10.1074/mcp.m115.051920

McKenzie, C., Bassi, Z. I., Debski, J., Gottardo, M., Callaini, G., Dadlez, M., D'Avino, P. P. (2016) Cross-regulation between Aurora B and Citron kinase controls midbody architecture in cytokinesis. Open Biol. 6, 160019. doi:10.1098/rsob.160019

Skrajna, A., Yang, X.-. cui ., Tarnowski, K., Fituch, K., Marzluff, W. F., Dominski, Z., Dadlez, M. (2016) Mapping the Interaction Network of Key Proteins Involved in Histone mRNA Generation: A Hydrogen/Deuterium Exchange Study. Journal of Molecular Biology 428, 1180–1196. doi:10.1016/j.jmb.2016.01.031

Richter, M. M., Poznanski, J., Zdziarska, A., Czarnocki-Cieciura, M., Lipinszki, Z., Dadlez, M., Glover, D. M., Przewloka, M. R. (2016) Network of protein interactions within the Drosophila inner kinetochore . Open Biol. 6, 150238. doi:10.1098/rsob.150238

Kotliński, M., Rutowicz, K., Kniżewski, Ł., Palusiński, A., Olędzki, J., Fogtman, A., Rubel, T., Koblowska, M., Dadlez, M., Ginalski, K., Jerzmanowski, A. (2016) Histone H1 Variants in Arabidopsis Are Subject to Numerous Post-Translational Modifications, Both Conserved and Previously Unknown in Histones, Suggesting Complex Functions of H1 in Plants. PLOS ONE 11, e0147908. doi:10.1371/journal.pone.0147908

Trzeciecka, A., Klossowski, S., Bajor, M., Zagozdzon, R., Gaj, P., Muchowicz, A., Malinowska, A., Czerwoniec, A., Barankiewicz, J., Domagala, A., Chlebowska, J., Prochorec-Sobieszek, M., Winiarska, M., Ostaszewski, R., Gwizdalska, I., Golab, J., Nowis, D., Firczuk, M. (2016) Dimeric peroxiredoxins are druggable targets in human Burkitt lymphoma. Oncotarget, doi:10.18632/oncotarget.6435

Drabikowski, K., Dadlez, M. (2016) Dissecting SUMO Dynamics by Mass Spectrometry. Methods in Molecular Biology, 291–298. doi:10.1007/978-1-4939-3756-1_18

Nieckarz, M., Raczkowska, A., Dębski, J., Kistowski, M., Dadlez, M., Heesemann, J., Rossier, O., Brzostek, K. (2015) Impact of OmpR on the membrane proteome of Yersinia enterocolitica in different environments: repression of major adhesin YadA and heme receptor HemR . Environ Microbiol, doi:10.1111/1462-2920.13165

Premchandar, A., Kupniewska, A., Tarnowski, K., Mücke, N., Mauermann, M., Kaus–Drobek, M., Edelman, A., Herrmann, H., Dadlez, M. (2015) Analysis of distinct molecular assembly complexes of keratin K8 and K18 by hydrogen-deuterium exchange. Journal of Structural Biology, doi:10.1016/j.jsb.2015.10.001

Jastrzebska, Z., Kaminska, J., Chelstowska, A., Domanska, A., Rzepnikowska, W., Sitkiewicz, E., Cholbinski, P., Gourlay, C., Plochocka, D., Zoladek, T. (2015) Mimicking the phosphorylation of Rsp5 in PKA site T761 affects its function and cellular localization. European Journal of Cell Biology, doi:10.1016/j.ejcb.2015.10.005

Kazazić, S., Bertoša, B., Luić, M., Mikleušević, G., Tarnowski, K., Dadlez, M., Narczyk, M., Bzowska, A. (2015) New Insights into Active Site Conformation Dynamics of E. coli PNP Revealed by Combined H/D Exchange Approach and Molecular Dynamics Simulations. J. Am. Soc. Mass Spectrom., doi:10.1007/s13361-015-1239-2

Scifo, E., Szwajda, A., Soliymani, R., Pezzini, F., Bianchi, M., Dapkunas, A., Dębski, J., Uusi-Rauva, K., Dadlez, M., Gingras, A.-C., Tyynelä, J., Simonati, A., Jalanko, A., Baumann, M. H., Lalowski, M. (2015) Quantitative analysis of PPT1 interactome in human neuroblastoma cells. Data in Brief 4, 207–216. doi:10.1016/j.dib.2015.05.016

Tarczewska, A., Kozłowska, M., Dobryszycki, P., Kaus-Drobek, M., Dadlez, M., Ożyhar, A. (2015) Insight into the Unfolding Properties of Chd64, a Small, Single Domain Protein with a Globular Core and Disordered Tails. PLOS ONE 10, e0137074. doi:10.1371/journal.pone.0137074

Tomecki, R., Labno, A., Drazkowska, K., Cysewski, D., Dziembowski, A. (2015) hUTP24 is essential for processing of the human rRNA precursor at site A1, but not at site A0. RNA Biology 12, 1010–1029. doi:10.1080/15476286.2015.1073437

Hennig, E. E., Piatkowska, M., Karczmarski, J., Goryca, K., Brewczynska, E., Jazwiec, R., Kluska, A., Omiotek, R., Paziewska, A., Dadlez, M., Ostrowski, J. (2015) Limited predictive value of achieving beneficial plasma (Z)-endoxifen threshold level by CYP2D6 genotyping in tamoxifen-treated Polish women with breast cancer. BMC Cancer 15, doi:10.1186/s12885-015-1575-4

Scifo, E., Szwajda, A., Soliymani, R., Pezzini, F., Bianchi, M., Dapkunas, A., Dębski, J., Uusi-Rauva, K., Dadlez, M., Gingras, A.-C., Tyynelä, J., Simonati, A., Jalanko, A., Baumann, M. H., Lalowski, M. (2015) Proteomic analysis of the palmitoyl protein thioesterase 1 interactome in SH-SY5Y human neuroblastoma cells. Journal of Proteomics 123, 42–53. doi:10.1016/j.jprot.2015.03.038

Edlich-Muth, C., Artero, J.-B., Callow, P., Przewloka, M. R., Watson, A. A., Zhang, W., Glover, D. M., Debski, J., Dadlez, M., Round, A. R., Forsyth, V. T., Laue, E. D. (2015) The Pentameric Nucleoplasmin Fold Is Present in Drosophila FKBP39 and a Large Number of Chromatin-Related Proteins. Journal of Molecular Biology 427, 1949–1963. doi:10.1016/j.jmb.2015.03.010

Ambroziak, U., Kępczyńska-Nyk, A., Kuryłowicz, A., Wysłouch-Cieszyńska, A., Małunowicz, E. M., Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Pawłowska, E., Szcześniak, M., Dadlez, M., Bednarczuk, T. (2015) LC-MS/MS improves screening towards 21-hydroxylase deficiency.. Gynecological endocrinology : the official journal of the International Society of Gynecological Endocrinology 31, 296–300. doi:10.3109/09513590.2014.994599

Czubinski, J., Barciszewski, J., Gilski, M., Szpotkowski, K., Debski, J., Lampart-Szczapa, E., Jaskolski, M. (2015) Structure of γ-conglutin: insight into the quaternary structure of 7S basic globulins from legumes. Acta Cryst D Biol Crystallogr 71, 224–238. doi:10.1107/s1399004714025073

Gegeckas, A., Gudiukaitė, R., Debski, J., Citavicius, D. (2015) Keratinous waste decomposition and peptide production by keratinase from Geobacillus stearothermophilus AD-11. International Journal of Biological Macromolecules, doi:10.1016/j.ijbiomac.2015.01.031

Zegarska, J., Hryniewiecka, E., Zochowska, D., Tszyrsznic, W., Jazwiec, R., Borowiec, A., Pawlowska, E., Dadlez, M., Pączek, L. (2015) Mycophenolic Acid Metabolites Acyl-Glucuronide and Glucoside Affect the Occurrence of Infectious Complications and Bone Marrow Dysfunction in Liver Transplant Recipients. Annals of Transplantation 20, 483–492. doi:10.12659/aot.894954

Lewandowicz, A., Bakun, M., Kohutnicki, R., Fabijańska, A., Kistowski, M., Imiela, J., Dadlez, M. (2015) Changes in urine proteome accompanying diabetic nephropathy progression.. Polskie Archiwum Medycyny Wewnętrznej 125, 27–38. doi:10.20452/pamw.2640

Ufnal, M., Jazwiec, R., Dadlez, M., Drapala, A., Sikora, M., Skrzypecki, J. (2014) TMAO, a carnitine-derived metabolite, prolongs the hypertensive effect of Ang II in rats. Canadian Journal of Cardiology, doi:10.1016/j.cjca.2014.09.010

Dzhindzhev, N. S., Tzolovsky, G., Lipinszki, Z., Schneider, S., Lattao, R., Fu, J., Debski, J., Dadlez, M., Glover, D. M. (2014) Plk4 Phosphorylates Ana2 to Trigger Sas6 Recruitment and Procentriole Formation. Current Biology, doi:10.1016/j.cub.2014.08.061

Kacprzyk-Stokowiec, A., Kulma, M., Traczyk, G., Kwiatkowska, K., Sobota, A., Dadlez, M. (2014) Crucial Role of Perfringolysin O D1 Domain in Orchestrating Structural Transitions Leading to Membrane-Perforating Pores: A Hydrogen-Deuterium Exchange Study. Journal of Biological Chemistry, doi:10.1074/jbc.m114.577981

Petkauskaite, R., Lukosius, D., Dębski, J., Jasilionis, A., Dadlez, M., Kieraite, I., Timonina, A., Kuisiene, N. (2014) Identification of proteins involved in starch and polygalacturonic acid degradation using LC/MS. Central European Journal of Biology 9, 708–716. doi:10.2478/s11535-014-0303-4

Nicholls, T. J., Zsurka, G., Peeva, V., Schöler, S., Szczesny, R. J., Cysewski, D., Reyes, A., Kornblum, C., Sciacco, M., Moggio, M., Dziembowski, A., Kunz, W. S., Minczuk, M. (2014) Linear mtDNA fragments and unusual mtDNA rearrangements associated with pathological deficiency of MGME1 exonuclease. Human Molecular Genetics 23, 6147–6162. doi:10.1093/hmg/ddu336

Mierzejewska, K., Siwek, W., Czapinska, H., Kaus-Drobek, M., Radlinska, M., Skowronek, K., Bujnicki, J. M., Dadlez, M., Bochtler, M. (2014) Structural basis of the methylation specificity of R.DpnI. Nucleic Acids Research 42, 8745–8754. doi:10.1093/nar/gku546

Sitkiewicz, E., Olędzki, J., Poznański, J., Dadlez, M. (2014) Di-Tyrosine Cross-Link Decreases the Collisional Cross-Section of Aβ Peptide Dimers and Trimers in the Gas Phase: An Ion Mobility Study. PLoS ONE 9, e100200. doi:10.1371/journal.pone.0100200

Mucha, K., Bakun, M., Jaźwiec, R., Dadlez, M., Florczak, M., Bajor, M., Gala, K., Pączek, L. (2014) Complement components, proteolysis‑related, and cell communication‑related proteins detected in urine proteomics are associated with IgA nephropathy. Polish Archives of Internal Medicine 124, 380–386. doi:10.20452/pamw.2345

Zareba-Koziol, M., Szwajda, A., Dadlez, M., Wyslouch-Cieszynska, A., Lalowski, M. (2014) Global analysis of S-nitrosylation sites in the wild type and APP transgenic mouse brain- clues for synaptic pathology.. Molecular & Cellular Proteomics, doi:10.1074/mcp.m113.036079

Mohammed, Y., Domański, D., Jackson, A. M., Smith, D. S., Deelder, A. M., Palmblad, M., Borchers, C. H. (2014) PeptidePicker: A scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments. Journal of Proteomics 106, 151–161. doi:10.1016/j.jprot.2014.04.018

Tarnowski, K., Fituch, K., Szczepanowski, R. H., Dadlez, M., Kaus-Drobek, M. (2014) Patterns of structural dynamics in RACK1 protein retained throughout evolution: A hydrogen-deuterium exchange study of three orthologs. Protein Science 23, 639–651. doi:10.1002/pro.2448

Sitkiewicz, E., Kłoniecki, M., Poznański, J., Bal, W., Dadlez, M. (2014) Factors Influencing Compact–Extended Structure Equilibrium in Oligomers of Aβ1–40 Peptide—An Ion Mobility Mass Spectrometry Study. Journal of Molecular Biology, doi:10.1016/j.jmb.2014.05.015

Płociński, P., Laubitz, D., Cysewski, D., Stoduś, K., Kowalska, K., Dziembowski, A. (2014) Identification of Protein Partners in Mycobacteria Using a Single-Step Affinity Purification Method. PLoS ONE 9, e91380. doi:10.1371/journal.pone.0091380

Nesteruk, M., Hennig, E. E., Mikula, M., Karczmarski, J., Dzwonek, A., Goryca, K., Rubel, T., Paziewska, A., Woszczynski, M., Ledwon, J., Dabrowska, M., Dadlez, M., Ostrowski, J. (2014) Mitochondrial-related proteomic changes during obesity and fasting in mice are greater in the liver than skeletal muscles. Funct Integr Genomics 14, 245–259. doi:10.1007/s10142-013-0342-3

Bakun, M., Senatorski, G., Rubel, T., Lukasik, A., Zielenkiewicz, P., Dadlez, M., Paczek, L. (2014) Urine proteomes of healthy aging humans reveal extracellular matrix (ECM) alterations and immune system dysfunction. AGE 36, 299–311. doi:10.1007/s11357-013-9562-7

Karczmarski, J., Rubel, T., Paziewska, A., Mikula, M., Bujko, M., Kober, P., Dadlez, M., Ostrowski, J. (2014) Histone H3 lysine 27 acetylation is altered in colon cancer. Clinical Proteomics 11, 24. doi:10.1186/1559-0275-11-24

Mucha, K., Bakun, M., Jaźwiec, R., Dadlez, M., Florczak, M., Bajor, M., Gala, K., Pączek, L. (2014) Complement components, proteolysis‑related, and cell communication‑related proteins detected in urine proteomics are associated with IgA nephropathy.. Polskie Archiwum Medycyny Wewnętrznej 124, 380–386.

Kopera, E., Dwornyk, A., Kosson, P., Florys, K., Sączyńska, V., Dębski, J., Cecuda-Adamczewska, V., Szewczyk, B., Zagórski-Ostoja, W., Grzelak, K. (2014) Expression, purification and characterization of glycosylated influenza H5N1 hemagglutinin produced in Pichia pastoris.. Acta biochimica Polonica 61, 597–602.

Czerwińska, J., Poznański, J., Dębski, J., Bukowy, Z., Bohr, V. A., Tudek, B., Speina, E. (2014) Catalytic activities of Werner protein are affected by adduction with 4-hydroxy-2-nonenal.. Nucleic acids research 42, 11119–11135. doi:10.1093/nar/gku783

Sabath, I., Skrajna, A., Yang, X.-. c ., Dadlez, M., Marzluff, W. F., Dominski, Z. (2013) 3'-End processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors. RNA 19, 1726–1744. doi:10.1261/rna.040360.113

Percy, A. J., Chambers, A. G., Yang, J., Jackson, A. M., Domanski, D., Burkhart, J., Sickmann, A., Borchers, C. H. (2013) Method and platform standardization in MRM-based quantitative plasma proteomics. Journal of Proteomics 95, 66–76. doi:10.1016/j.jprot.2013.07.026

Cunha-Ferreira, I., Bento, I., Pimenta-Marques, A., Jana, S. C., Lince-Faria, M., Duarte, P., Borrego-Pinto, J., Gilberto, S., Amado, T., Brito, D., Rodrigues-Martins, A., Debski, J., Dzhindzhev, N., Bettencourt-Dias, M. (2013) Regulation of Autophosphorylation Controls PLK4 Self-Destruction and Centriole Number. Current Biology 23, 2245–2254. doi:10.1016/j.cub.2013.09.037

Hoser, R., Żurczak, M., Lichocka, M., Zuzga, S., Dadlez, M., Samuel, M. A., Ellis, B. E., Stuttmann, J., Parker, J. E., Hennig, J., Krzymowska, M. (2013) Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1. New Phytologist 200, 158–171. doi:10.1111/nph.12347

Sitkiewicz, E., Tarnowski, K., Poznański, J., Kulma, M., Dadlez, M. (2013) Oligomerization Interface of RAGE Receptor Revealed by MS-Monitored Hydrogen Deuterium Exchange. PLoS ONE 8, e76353. doi:10.1371/journal.pone.0076353

Odolczyk, N., Fritsch, J., Norez, C., Servel, N., da Cunha, M. F., Bitam, S., Kupniewska, A., Wiszniewski, L., Colas, J., Tarnowski, K., Tondelier, D., Roldan, A., Saussereau, E. L., Melin-Heschel, P., Wieczorek, G., Lukacs, G. L., Dadlez, M., Faure, G., Herrmann, H., Ollero, M., Becq, F., Zielenkiewicz, P., Edelman, A. (2013) Discovery of novel potent ΔF508-CFTR correctors that target the nucleotide binding domain. EMBO Mol Med 5, 1484–1501. doi:10.1002/emmm.201302699

Orlowska, K. P., Klosowska, K., Szczesny, R. J., Cysewski, D., Krawczyk, P. S., Dziembowski, A. (2013) A new strategy for gene targeting and functional proteomics using the DT40 cell line. Nucleic Acids Research 41, e167–e167. doi:10.1093/nar/gkt650

Bal, G., Kamhieh-Milz, J., Sterzer, V., Al-Samman, M., Debski, J., Klein, O., Kamhieh-Milz, S., Bhakdi, S., Salama, A. (2013) Proteomic Profiling of Secreted Proteins for the Hematopoietic Support of Interleukin-Stimulated Human Umbilical Vein Endothelial Cells. Cell Transplant 22, 1185–1199. doi:10.3727/096368912x657288

Lubas, M., Damgaard, C. K., Tomecki, R., Cysewski, D., Jensen, T. H., Dziembowski, A. (2013) Exonuclease hDIS3L2 specifies an exosome-independent 3′-5′ degradation pathway of human cytoplasmic mRNA. EMBO J 32, 1855–1868. doi:10.1038/emboj.2013.135

Tszyrsznic, W., Borowiec, A., Pawlowska, E., Jazwiec, R., Zochowska, D., Bartlomiejczyk, I., Zegarska, J., Paczek, L., Dadlez, M. (2013) Two rapid ultra performance liquid chromatography/tandem mass spectrometry (UPLC/MS/MS) methods with common sample pretreatment for therapeutic drug monitoring of immunosuppressants compared to immunoassay. Journal of Chromatography B 928, 9–15. doi:10.1016/j.jchromb.2013.03.014

Scifo, E., Szwajda, A., Dębski, J., Uusi-Rauva, K., Kesti, T., Dadlez, M., Gingras, A.-C., Tyynelä, J., Baumann, M. H., Jalanko, A., Lalowski, M. (2013) Drafting the CLN3 Protein Interactome in SH-SY5Y Human Neuroblastoma Cells: A Label-free Quantitative Proteomics Approach. J. Proteome Res. 12, 2101–2115. doi:10.1021/pr301125k

Giska, F., Lichocka, M., Piechocki, M., Dadlez, M., Schmelzer, E., Hennig, J., Krzymowska, M. (2013) Phosphorylation of HopQ1, a Type III Effector from Pseudomonas syringae, Creates a Binding Site for Host 14-3-3 Proteins. PLANT PHYSIOLOGY 161, 2049–2061. doi:10.1104/pp.112.209023

Jarocki, P. (2013) Spontaneous Release of Bacteriophage Particles by Lactobacillus rhamnosus Pen. J. Microbiol. Biotechnol. 23, 357–363. doi:10.4014/jmb.1207.07037

Rozek, W., Kwasnik, M., Debski, J., Zmudzinski, J. F. (2013) Mass spectrometry identification of granins and other proteins secreted by neuroblastoma cells. Tumor Biol. 34, 1773–1781. doi:10.1007/s13277-013-0716-0

Jarocki, P., Podleśny, M., Pawelec, J., Malinowska, A., Kowalczyk, S., Targoński, Z. (2013) Spontaneous release of bacteriophage particles by Lactobacillus rhamnosus pen.. Journal of microbiology and biotechnology 23, 357–363.

Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Popow, M., Dadlez, M., Bednarczuk, T. (2013) Can we accurately measure the concentration of clinically relevant vitamin D metabolites in the circulation? The problems and their consequences.. Endokrynologia Polska 64, 238–245.

Karczmarski, J., Rubel, T., Mikula, M., Wolski, J., Rutkowski, A., Zagorowicz, E., Dadlez, M., Ostrowski, J. (2013) Pre-analytical-related variability influencing serum peptide profiles demonstrated in a mass spectrometry-based search for colorectal and prostate cancer biomarkers.. Acta biochimica Polonica 60, 417–425.

Yang, X.-C., Sabath, I., Debski, J., Kaus-Drobek, M., Dadlez, M., Marzluff, W. F., Dominski, Z. (2012) A Complex Containing the CPSF73 Endonuclease and Other Polyadenylation Factors Associates with U7 snRNP and Is Recruited to Histone Pre-mRNA for 3'-End Processing. Molecular and Cellular Biology 33, 28–37. doi:10.1128/MCB.00653-12

Richardson, K., Denny, R., Hughes, C., Skilling, J., Sikora, J., Dadlez, M., Manteca, A., Jung, H. R., Jensen, O. N., Redeker, V., Melki, R., Langridge, J. I., Vissers, J. P. C. (2012) A Probabilistic Framework for Peptide and Protein Quantification from Data-Dependent and Data-Independent LC-MS Proteomics Experiments. OMICS: A Journal of Integrative Biology 16, 468–482. doi:10.1089/omi.2012.0019

Malinowska, A., Kistowski, M., Bakun, M., Rubel, T., Tkaczyk, M., Mierzejewska, J., Dadlez, M. (2012) Diffprot — software for non-parametric statistical analysis of differential proteomics data. Journal of Proteomics 75, 4062–4073. doi:10.1016/j.jprot.2012.05.030

Hennig, E. E., Mikula, M., Rubel, T., Dadlez, M., Ostrowski, J. (2012) Comparative kinome analysis to identify putative colon tumor biomarkers. J Mol Med 90, 447–456. doi:10.1007/s00109-011-0831-6

Bystranowska, D., Szewczuk, Z., Lisowski, M., Sitkiewicz, E., Dobryszycki, P., Ożyhar, A., Kochman, M. (2012) Intramolecular cross-linking in the native JHBP molecule. Archives of Biochemistry and Biophysics 517, 12–19. doi:10.1016/j.abb.2011.10.021

Bakun, M., Niemczyk, M., Domanski, D., Jazwiec, R., Perzanowska, A., Niemczyk, S., Kistowski, M., Fabijanska, A., Borowiec, A., Paczek, L., Dadlez, M. (2012) Urine proteome of autosomal dominant polycystic kidney disease patients. Clinical Proteomics 9, 13. doi:10.1186/1559-0275-9-13

Kowalczyk, J. E., Kawalec, M., Beręsewicz, M., Dębski, J., Dadlez, M., Zabłocka, B. (2012) Protein kinase C beta in postischemic brain mitochondria. Mitochondrion 12, 138–143. doi:10.1016/j.mito.2011.06.002

Zaremba-Czogalla, M., Gagat, P., Kozioł, K., Dubińska-Magiera, M., Sikora, J., Dadlez, M., Rzepecki, R. (2011) Identification of new in vivo phosphosites on lamin Dm - the evidence of heterogeneity of phosphorylation sites in different Drosophila tissues. Nucleus 2, 478–488. doi:10.4161/nucl.2.5.17864

Rangone, H., Wegel, E., Gatt, M. K., Yeung, E., Flowers, A., Debski, J., Dadlez, M., Janssens, V., Carpenter, A. T. C., Glover, D. M. (2011) Suppression of Scant Identifies Endos as a Substrate of Greatwall Kinase and a Negative Regulator of Protein Phosphatase 2A in Mitosis. PLoS Genetics 7, e1002225. doi:10.1371/journal.pgen.1002225

Thouverey, C., Malinowska, A., Balcerzak, M., Strzelecka-Kiliszek, A., Buchet, R., Dadlez, M., Pikula, S. (2011) Proteomic characterization of biogenesis and functions of matrix vesicles released from mineralizing human osteoblast-like cells. Journal of Proteomics 74, 1123–1134. doi:10.1016/j.jprot.2011.04.005

Mikula, M., Rubel, T., Karczmarski, J., Goryca, K., Dadlez, M., Ostrowski, J. (2011) Integrating proteomic and transcriptomic high-throughput surveys for search of new biomarkers of colon tumors. Funct Integr Genomics 11, 215–224. doi:10.1007/s10142-010-0200-5

Gospodarska, E., Kupniewska-Kozak, A., Goch, G., Dadlez, M. (2011) Binding studies of truncated variants of the Aβ peptide to the V-domain of the RAGE receptor reveal Aβ residues responsible for binding. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, 592–609. doi:10.1016/j.bbapap.2011.02.011

Winiarska, B., Dwornik, A., Dębski, J., Grzelak, K., Bystranowska, D., Zalewska, M., Dadlez, M., Ożyhar, A., Kochman, M. (2011) N-linked glycosylation of G. mellonella juvenile hormone binding protein — Comparison of recombinant mutants expressed in P. pastoris cells with native protein. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, 610–621. doi:10.1016/j.bbapap.2011.02.002

Graczyk, D., Debski, J., Muszynska, G., Bretner, M., Lefebvre, O., Boguta, M. (2011) Casein kinase II-mediated phosphorylation of general repressor Maf1 triggers RNA polymerase III activation. Proceedings of the National Academy of Sciences 108, 4926–4931. doi:10.1073/pnas.1010010108

Przewloka, M. R., Venkei, Z., Bolanos-Garcia, V. M., Debski, J., Dadlez, M., Glover, D. M. (2011) CENP-C Is a Structural Platform for Kinetochore Assembly. Current Biology 21, 399–405. doi:10.1016/j.cub.2011.02.005

Kłoniecki, M., Jabłonowska, A., Poznański, J., Langridge, J., Hughes, C., Campuzano, I., Giles, K., Dadlez, M. (2011) Ion Mobility Separation Coupled with MS Detects Two Structural States of Alzheimer's Disease Aβ1–40 Peptide Oligomers. Journal of Molecular Biology 407, 110–124. doi:10.1016/j.jmb.2011.01.012

Kupniewska-Kozak, A., Gospodarska, E., Dadlez, M. (2010) Intertwined Structured and Unstructured Regions of exRAGE Identified by Monitoring Hydrogen–Deuterium Exchange. Journal of Molecular Biology 403, 52–65. doi:10.1016/j.jmb.2010.08.027

Brooks, M. A., Gewartowski, K., Mitsiki, E., Létoquart, J., Pache, R. A., Billier, Y., Bertero, M., Corréa, M., Czarnocki-Cieciura, M., Dadlez, M., Henriot, V., Lazar, N., Delbos, L., Lebert, D., Piwowarski, J., Rochaix, P., Böttcher, B., Serrano, L., Séraphin, B., van Tilbeurgh, H., Aloy, P., Perrakis, A., Dziembowski, A. (2010) Systematic Bioinformatics and Experimental Validation of Yeast Complexes Reduces the Rate of Attrition during Structural Investigations. Structure 18, 1075–1082. doi:10.1016/j.str.2010.08.001

Mikula, M., Gaj, P., Dzwonek, K., Rubel, T., Karczmarski, J., Paziewska, A., Dzwonek, A., Bragoszewski, P., Dadlez, M., Ostrowski, J. (2010) Comprehensive Analysis of the Palindromic Motif TCTCGCGAGA: A Regulatory Element of the HNRNPK Promoter. DNA Research 17, 245–260. doi:10.1093/dnares/dsq016

Wawer, I., Bucholc, M., Astier, J., Anielska‑Mazur, A., Dahan, J., Kulik, A., Wysłouch‑Cieszynska, A., Zaręba‑Kozioł, M., Krzywinska, E., Dadlez, M., Dobrowolska, G., Wendehenne, D. (2010) Regulation of Nicotiana tabacum osmotic stress-activated protein kinase and its cellular partner GAPDH by nitric oxide in response to salinity . Biochemical Journal 429, 73–83. doi:10.1042/BJ20100492

Kedracka-Krok, S., Fic, E., Jankowska, U., Jaciuk, M., Gruca, P., Papp, M., Kusmider, M., Solich, J., Debski, J., Dadlez, M., Dziedzicka-Wasylewska, M. (2010) Effect of chronic mild stress and imipramine on the proteome of the rat dentate gyrus. Journal of Neurochemistry 113, 848–859. doi:10.1111/j.1471-4159.2010.06652.x

Rózga, M., Kłoniecki, M., Dadlez, M., Bal, W. (2010) A Direct Determination of the Dissociation Constant for the Cu(II) Complex of Amyloid β 1−40 Peptide. Chemical Research in Toxicology 23, 336–340. doi:10.1021/tx900344n

Arnaiz, O., Malinowska, A., Klotz, C., Sperling, L., Dadlez, M., Koll, F., Cohen, J. (2009) Cildb: a knowledgebase for centrosomes and cilia. Database 2009, bap022–bap022. doi:10.1093/database/bap022

Sikora, J., Towpik, J., Graczyk, D., Kistowski, M., Rubel, T., Poznanski, J., Langridge, J., Hughes, C., Dadlez, M., Boguta, M. (2009) Yeast prion [PSI+] lowers the levels of mitochondrial prohibitins. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1793, 1703–1709. doi:10.1016/j.bbamcr.2009.08.003

Bakun, M., Karczmarski, J., Poznanski, J., Rubel, T., Rozga, M., Malinowska, A., Sands, D., Hennig, E., Oledzki, J., Ostrowski, J., Dadlez, M. (2009) An integrated LC-ESI-MS platform for quantitation of serum peptide ladders. Application for colon carcinoma study. PROTEOMICS - CLINICAL APPLICATIONS 3, 932–946. doi:10.1002/prca.200800111

Konopka-Postupolska, D., Clark, G., Goch, G., Debski, J., Floras, K., Cantero, A., Fijolek, B., Roux, S., Hennig, J. (2009) The Role of Annexin 1 in Drought Stress in Arabidopsis. PLANT PHYSIOLOGY 150, 1394–1410. doi:10.1104/pp.109.135228

Trudel, S., Kelly, M., Fritsch, J., Nguyen-Khoa, T., Thérond, P., Couturier, M., Dadlez, M., Debski, J., Touqui, L., Vallée, B., Ollero, M., Edelman, A., Brouillard, F. (2009) Peroxiredoxin 6 Fails to Limit Phospholipid Peroxidation in Lung from Cftr-Knockout Mice Subjected to Oxidative Challenge. PLoS ONE 4, e6075. doi:10.1371/journal.pone.0006075

Jagusztyn-Krynicka, E. K., Dadlez, M., Grabowska, A., Roszczenko, P. (2009) Proteomic technology in the design of new effective antibacterial vaccines. Expert Review of Proteomics 6, 315–330. doi:10.1586/epr.09.47

Gambin, A., Szczurek, E., Dutkowski, J., Bakun, M., Dadlez, M. (2009) Classification of peptide mass fingerprint data by novel no-regret boosting method. Computers in Biology and Medicine 39, 460–473. doi:10.1016/j.compbiomed.2009.03.006

Petrakis, S., Malinowska, A., Dadlez, M., Sklaviadis, T. (2009) [u'Identification of proteins co-purifying with scrapie infectivity']. [u'Journal of Proteomics'] 72, 690–694. doi:10.1016/j.jprot.2009.01.025

Rózga, M., Protas, A. M., Jabłonowska, A., Dadlez, M., Bal, W. (2009) The Cu(ii) complex of Aβ40 peptide in ammonium acetate solutions. Evidence for ternary species formation. Chemical Communications, 1374. doi:10.1039/b819616h

Kowalczyk, J. E., Beręsewicz, M., Gajkowska, B., Zabłocka, B. (2009) Association of protein kinase C delta and phospholipid scramblase 3 in hippocampal mitochondria correlates with neuronal vulnerability to brain ischemia. Neurochemistry International 55, 157–163. doi:10.1016/j.neuint.2009.01.009

Havrylov, S., Rzhepetskyy, Y., Malinowska, A., Drobot, L., Redowicz, M. (2009) Proteins recruited by SH3 domains of Ruk/CIN85 adaptor identified by LC-MS/MS. Proteome Science 7, 21. doi:10.1186/1477-5956-7-21

Rutkowska-Wlodarczyk, I., Stepinski, J., Dadlez, M., Darzynkiewicz, E., Stolarski, R., Niedzwiecka, A. (2008) Structural Changes of eIF4E upon Binding to the mRNA 5′ Monomethylguanosine and Trimethylguanosine Cap † . Biochemistry 47, 2710–2720. doi:10.1021/bi701168z

Gogendeau, D., Klotz, C., Arnaiz, O., Malinowska, A., Dadlez, M., de Loubresse, N. G., Ruiz, F., Koll, F., Beisson, J. (2008) Functional diversification of centrins and cell morphological complexity. Journal of Cell Science 121, 65–74. doi:10.1242/jcs.019414

Balcerzak, M., Malinowska, A., Thouverey, C., Sekrecka, A., Dadlez, M., Buchet, R., Pikula, S. (2008) Proteome analysis of matrix vesicles isolated from femurs of chicken embryo. PROTEOMICS 8, 192–205. doi:10.1002/pmic.200700612

Rózga, M., Kłoniecki, M., Jabłonowska, A., Dadlez, M., Bal, W. (2007) The binding constant for amyloid Aβ40 peptide interaction with human serum albumin. Biochemical and Biophysical Research Communications 364, 714–718. doi:10.1016/j.bbrc.2007.10.080

Ostrowski, J., Mikula, M., Karczmarski, J., Rubel, T., Wyrwicz, L. S., Bragoszewski, P., Gaj, P., Dadlez, M., Butruk, E., Regula, J. (2007) Molecular defense mechanisms of Barrett’s metaplasia estimated by an integrative genomics. Journal of Molecular Medicine 85, 733–743. doi:10.1007/s00109-007-0176-3

Gambin, A., Dutkowski, J., Karczmarski, J., Kluge, B., Kowalczyk, K., Ostrowski, J., Poznański, J., Tiuryn, J., Bakun, M., Dadlez, M. (2007) Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures. International Journal of Mass Spectrometry 260, 20–30. doi:10.1016/j.ijms.2006.06.011

Burza, A. M., Pekala, I., Sikora, J., Siedlecki, P., Malagocki, P., Bucholc, M., Koper, L., Zielenkiewicz, P., Dadlez, M., Dobrowolska, G. (2006) Nicotiana tabacum Osmotic Stress-activated Kinase Is Regulated by Phosphorylation on Ser-154 and Ser-158 in the Kinase Activation Loop. Journal of Biological Chemistry 281, 34299–34311. doi:10.1074/jbc.M601977200

Mikula, M., Dzwonek, A., Karczmarski, J., Rubel, T., Dadlez, M., Wyrwicz, L. S., Bomsztyk, K., Ostrowski, J. (2006) Landscape of the hnRNP K protein–protein interactome. PROTEOMICS 6, 2395–2406. doi:10.1002/pmic.200500632

Mikula, M., Karczmarski, J., Dzwonek, A., Rubel, T., Hennig, E., Dadlez, M., Bujnicki, J. M., Bomsztyk, K., Ostrowski, J. (2006) Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1764, 299–306. doi:10.1016/j.bbapap.2005.12.004

Hinzpeter, A. (2005) Association between Hsp90 and the ClC-2 chloride channel upregulates channel function. AJP: Cell Physiology 290, C45–C56. doi:10.1152/ajpcell.00209.2005

Davezac, N., Tondelier, D., Lipecka, J., Fanen, P., Demaugre, F., Debski, J., Dadlez, M., Schrattenholz, A., Cahill, M. A., Edelman, A. (2004) Global proteomic approach unmasks involvement of keratins 8 and 18 in the delivery of cystic fibrosis transmembrane conductance regulator (CFTR)/ΔF508-CFTR to the plasma membrane. PROTEOMICS 4, 3833–3844. doi:10.1002/pmic.200400850

Jablonowska, A., Bakun, M., Kupniewska-Kozak, A., Dadlez, M. (2004) Alzheimer's Disease Aβ Peptide Fragment 10–30 Forms a Spectrum of Metastable Oligomers with Marked Preference for N to N and C to C Monomer Termini Proximity. Journal of Molecular Biology 344, 1037–1049. doi:10.1016/j.jmb.2004.09.083

Zuberek, J., Jemielity, J., Jablonowska, A., Stepinski, J., Dadlez, M., Stolarski, R., Darzynkiewicz, E. (2004) Influence of Electric Charge Variation at Residues 209 and 159 on the Interaction of eIF4E with the mRNA 5‘ Terminus † . Biochemistry 43, 5370–5379. doi:10.1021/bi030266t

Dębski, J., Wysłouch-Cieszyńska, A., Dadlez, M., Grzelak, K., Kłudkiewicz, B., Kołodziejczyk, R., Lalik, A., Ożyhar, A., Kochman, M. (2004) Positions of disulfide bonds and N-glycosylation site in juvenile hormone binding protein. Archives of Biochemistry and Biophysics 421, 260–266. doi:10.1016/j.abb.2003.10.019

Grzelak, K., Kłudkiewicz, B., Kolomiets, L. I., Dȩbski, J., Dadlez, M., Lalik, A., Ożyhar, A., Kochman, M. (2003) Overexpression of juvenile hormone binding protein in bacteria and Pichia pastoris. Protein Expression and Purification 31, 173–180. doi:10.1016/s1046-5928(03)00192-x

Dominski, Z., Yang, X.-. cui ., Kaygun, H., Dadlez, M., Marzluff, W. F. (2003) A 3′ Exonuclease that Specifically Interacts with the 3′ End of Histone mRNA. Molecular Cell 12, 295–305. doi:10.1016/s1097-2765(03)00278-8

ZUBEREK, J. (2003) Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: Intein-mediated protein ligation strategy to obtain phosphorylated protein. RNA 9, 52–61. doi:10.1261/rna.2133403

Kurowski, M. A., Sasin, J. M., Feder, M., Debski, J., Bujnicki, J. M. (2003) Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures. BMC Bioinformatics 4, 9. doi:10.1186/1471-2105-4-9

Bujnicki, J. M., Leach, R. A., Debski, J., Rychlewski, L. (2002) Bioinformatic analyses of the tRNA: (guanine 26, N2,N2)-dimethyltransferase (Trm1) family.. Journal of molecular microbiology and biotechnology 4, 405–415.

Niedzwiecka, A., Marcotrigiano, J., Stepinski, J., Jankowska-Anyszka, M., Wyslouch-Cieszynska, A., Dadlez, M., Gingras, A.-C., Mak, P., Darzynkiewicz, E., Sonenberg, N., Burley, S. K., Stolarski, R. (2002) Biophysical Studies of eIF4E Cap-binding Protein: Recognition of mRNA 5′ Cap Structure and Synthetic Fragments of eIF4G and 4E-BP1 Proteins. Journal of Molecular Biology 319, 615–635. doi:10.1016/S0022-2836(02)00328-5

Buczek, O. (2002) Analysis of serine proteinase-inhibitor interaction by alanine shaving. Protein Science 11, 806–819. doi:10.1110/ps.3510102

Kiczak, L., Kasztura, M., Koscielska-Kasprzak, K., Dadlez, M., Otlewski, J. (2001) Selection of potent chymotrypsin and elastase inhibitors from M13 phage library of basic pancreatic trypsin inhibitor (BPTI). Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology 1550, 153–163. doi:10.1016/s0167-4838(01)00282-5

Grzesiak, A., Krokoszynska, I., Krowarsch, D., Buczek, O., Dadlez, M., Otlewski, J. (2000) Inhibition of Six Serine Proteinases of the Human Coagulation System by Mutants of Bovine Pancreatic Trypsin Inhibitor. Journal of Biological Chemistry 275, 33346–33352. doi:10.1074/jbc.m006085200

Grzesiak, A., Helland, R., Smalås, A. O., Krowarsch, D., Dadlez, M., Otlewski, J. (2000) Substitutions at the P1′ position in BPTI strongly affect the association energy with serine proteinases. Journal of Molecular Biology 301, 205–217. doi:10.1006/jmbi.2000.3935

Krowarsch, D., Dadlez, M., Buczek, O., Krokoszynska, I., Smalas, A. O., Otlewski, J. (1999) Interscaffolding additivity: binding of P1 variants of bovine pancreatic trypsin inhibitor to four serine proteases. Journal of Molecular Biology 289, 175–186. doi:10.1006/jmbi.1999.2757

Helland, R., Otlewski, J., Sundheim, O., Dadlez, M., Smalås, A. O. (1999) The crystal structures of the complexes between bovine β-trypsin and ten P1 variants of BPTI. Journal of Molecular Biology 287, 923–942. doi:10.1006/jmbi.1999.2654

Zdanowski, K., Dadlez, M. (1999) Stability of the residual structure in unfolded BPTI in different conditions of temperature and solvent composition measured by disulphide kinetics and double mutant cycle analysis. Journal of Molecular Biology 287, 433–445. doi:10.1006/jmbi.1999.2622

Kiczak, L., Koscielska, K., Otlewski, J., Czerwinski, M., Dadlez, M. (1999) Phage display selection of P1 mutants of BPTI directed against five different serine proteinases.. Biological chemistry 380, 101–105. doi:10.1515/BC.1999.014

Krokoszynska, I., Dadlez, M., Otlewski, J. (1998) Structure of single-disulfide variants of bovine pancreatic trypsin inhibitor (BPTI) as probed by their binding to bovine β-trypsin. Journal of Molecular Biology 275, 503–513. doi:10.1006/jmbi.1997.1460