Respekta-Długosz, N., Kubicka, K., Greggio, A., Świderska, B., Malinowska, A., Rytelewska, E., Opydo, M., Dupont, J., Kamiński, T., Smolińska, N.and Rak, A. (2026) Role of omentin-1 in the global proteome of porcine pituitary cells: insights into proliferation- and apoptosis-related processes. Molecular and Cellular Endocrinology 622, 112896. doi:10.1016/j.mce.2026.112896

Kolek, L., Szczygieł, J., Kamińska-Gibas, T., Dietrich, M., Świderska, B., Malinowska, A., Ples, M.and Irnazarow, I. (2026) Effect of zymosan-induced peritonitis on carp reproductive parameters and seminal plasma proteome. Aquaculture 625, 744267. doi:10.1016/j.aquaculture.2026.744267

Tomecki, R., Drabko, M., Siek, M., Matykiewicz, M., Ludwinek, M., Borowski, Ł. S., Jurkiewicz, A., Kobyłecki, K., Jabłońska, A., Cysewski, D., Malinowska, A., Bakun, M., Płoski, R., Szczęsny, R. J.and Tudek, A. (2026) TTC33 forms a complex with WDR61 and PHF5A to recruit factors relevant to genomic integrity. Nat Commun, doi:10.1038/s41467-026-76928-z

Porubleva, L. V., Rayevsky, A., Malinowska, A., Świderska, B., Novosylna, O., Tsuvariev, O., Bakun, M., Kolesnyk, D., Dadlez, M.and Negrutskii, B. (2026) Targeted lysine‐to‐arginine substitutions at methylation sites in eEF1A1 differentially modulate protein interactions and translation. The FEBS Journal, doi:10.1111/febs.70710

Yang, X.-C., Desotell, A., Malinowska, A., Basundra, R., Pandey, G. K., Mohlke, K. L., Deshmukh, M., Dadlez, M., Tong, L.and Dominski, Z. (2026) Are components of the histone gene expression machinery functionally repurposed in terminally differentiated cells?. Biology Open 15, doi:10.1242/bio.062755

Ziółkowska, S., Kosmalski, M., Świderska, B., Szczypiorowska, A., Jarmusz, K., Ejsmont, M., Wróblewski, A. M., Szemraj, J., Pietras, T., Jabłkowska, A.and Czarny, P. (2026) Altered Mitochondrial Base Excision Repair and Mitochondrial DNA Instability in Peripheral Leukocytes of Patients with MASLD. Cells 15, 1415. doi:10.3390/cells15151415

Statkiewicz, M., Rumienczyk, I., Pakulska, U., Obacz, M., Kulecka, M., Cendrowski, J., Cubulska-Lubak, M., Kaniuga, E., Sandowska-Markiewicz, Z., Slusarczyk-Kacprzyk, W., Goryca, K., Rubel, T., Bakun, M., Swiderska, B., Kruczkowska-Tarantowicz, K., Rzepecki, P., Korsak, J., Kyc-Wachowiak, K., Polak, A., Juszczynski, P., Mazan, M., Rzymski, T., Ostrowski, J.and Mikula, M. (2026) Integrated Multi-Omics and Interactome Analysis of CDK8 Inhibition Reveals Erythroid Differentiation Programs and Therapeutic Synergy with BET Blockade in AML. Cells 15, 1414. doi:10.3390/cells15151414

Stefaniak, S., Wleklik, K., Nuc, K., Wojtyla, Ł., Samardakiewicz, S., Pietrowska-Borek, M., Sitkiewicz, E., Malinowska, A., Świderska, B.and Borek, S. (2026) Asparagine-Guided Regulation of Redox Status and Autophagy in Sugar-Starved Lupin (Lupinus spp.) Embryonic Axes—A Transcriptomic and Proteomic Approach. Int. J. Mol. Sci. 27, 6851. doi:10.3390/ijms27156851

Panja, C., Wiesyk, A., Masanta, S., Niedzwiecka, K., Baranowska, E., Cysewski, D., Sipko, M., Anielska-Mazur, A., Malinowska, A.and Kucharczyk, R. (2026) Profiling of Yeast Saccharomyces cerevisiae Mitochondrial AMPylome Reveals a Regulation of OXPHOS Coupling through ATP Synthase Subunit Delta. Journal of Proteome Research 25, 3965–3986. doi:10.1021/acs.jproteome.5c01273

Esmaeeli, M., Nikolić, L., Mazgaj, R., Das, S., Zhukova, L., Puchała, W., Dadlez, M.and Waldron, K. J. (2026) A closely related pair of superoxide dismutase isozymes from Staphylococcus aureus show distinct stabilities and proton-exchange dynamics. Journal of Biological Chemistry 302, 113226. doi:10.1016/j.jbc.2026.113226

Mazurek, Ł., Laskowska, A., Rybka, M., Zajdel, M., Szudzik, M., Salagierski, S., Dziadek, M., Sitkiewicz, E., Stradczuk-Mazurek, M., Frankowski, J., Schwartz, R.and Konop, M. (2026) Silk sericin enhances in vitro wound healing, modulates cytokeratin 16 and 17 expression, and exhibits immunomodulatory effects: an in vitro study for potential biomedical applications. International Journal of Biological Macromolecules 369, 152759. doi:10.1016/j.ijbiomac.2026.152759

Wakula, M., Jablonowska, M., Chmielarczyk, M., Tarnowski, L., Kulinczak, M., Sitkiewicz, E., Swiderska, B., Samborowska, E., Radkiewicz, M., Kianfar, M., Statkiewicz, M., Rumienczyk, I., Balcerak, A., Konopinski, R., Trebinska-Stryjewska, A.and Grzybowska, E. A. (2026) Granulocyte differentiation arrest in HAX1-deficient cells, demonstrated in a new in vitro model of a certain phenotypic aspects of Kostmann disease, is caused by ineffective lipid droplet autophagy and fatty acids uptake. Cell Death Dis 17, doi:10.1038/s41419-026-08805-y

Pich, K., Respekta-Długosz, N., Rytelewska, E., Świderska, B., Malinowska, A., Smolińska, N., Dupont, J.and Rak, A. (2026) The in vitro effect of omentin-1 on the global proteome of granulosa cells from normal weight Large White and fat Meishan pigs. Journal of Proteomics 326, 105606. doi:10.1016/j.jprot.2026.105606

Lozhko, D., Kolomiiets, L., Zhukova, L., Taube, M., Kozak, M., Dadlez, M., Kornelyuk, O.and Zhukov, I. (2026) Solution 3D structure and conformational flexibility of the endothelial monocyte activating polypeptide II (EMAP II) revealed by NMR spectroscopy and molecular dynamics simulations. Journal of Structural Biology 218, 108280. doi:10.1016/j.jsb.2025.108280

Puchała, W., Grzesiak, K., Rafacz, D., Kistowski, M., Smit, J. H., Marcoux, J., Dadlez, M.and Burdukiewicz, M. (2026) HaDeX2: multi-dimensional analysis of hydrogen–deuterium exchange mass spectrometry data. Bioinformatics 42, doi:10.1093/bioinformatics/btag128

Milczek‐Haduch, D., Żmigrodzka, M., Kiełbik, P., Świderska, B., Olędzki, J.and Witkowska‐Piłaszewicz, O. (2026) Comparative Analysis of Extracellular Vesicle Isolation From Equine Serum and Plasma Using Two Isolation Methods With Structural and Proteomic Validation. The FASEB Journal 40, doi:10.1096/fj.202504053r

Detman-Ignatowska, A., Chojnacka, A., Paul, M., Schiro, G., Jonczak, J., Samborowska, E., Karczmarski, J., Williams, A., Laubitz, D., Pęczek, T., Drężek, K.and Sikora, A. (2026) Impact of plant-derived biochars on biohydrogen production from sugar beet molasses in a continuous system: insights into the roles of microbial communities and chemical elements. International Journal of Hydrogen Energy 199, 152812. doi:10.1016/j.ijhydene.2025.152812

Smoradkova, K., Szudzik, M., Maksymiuk, K., Samborowska, E., Drapala, A., Ufnal, M.and Tomasova, L. (2026) Metabolic Alterations Associated With Diet and Hypertension in Rats. Journal of Nutrition and Metabolism 2026, doi:10.1155/jnme/6248625

Grzędzicka, J., Świderska, B., Sitkiewicz, E., Dąbrowska, I.and Witkowska‐Piłaszewicz, O. (2025) Exercise‐specific plasma proteomic signatures in racehorses: Candidates for training adaptation and peak load monitoring. Equine Veterinary Journal, doi:10.1002/evj.70146

Kołodziejska, K., Szczepańska, A., Vadlamani, S., Ponath Sukumaran, R., Radkiewicz, M., Bringmann, H., Pujol, N., Pokrzywa, W.and Turek, M. (2025) Volatile and non-volatile pathogen cues shape host extracellular vesicles production in pre-infection response. Nat Commun 17, doi:10.1038/s41467-025-67789-z

Kaczmarczyk, M., Kędzierska-Kapuza, K., Skonieczna-Żydecka, K., Surówka, A., Drożdżal, S., Lechowicz, K., Buszman, M., Szkudlarek, U., Cembrowska-Lech, D., Podsiadło, K., Samborowska, E., Łoniewski, I.and Ciechanowski, K. (2025) Modulating effects of microbiota on synbiotic intervention outcomes for microbiota-derived trimethylamine, trimethylamine N-oxide and indoxyl sulfate in healthy young medical students: insights from a 12-week randomized clinical trial. J Transl Med 23, doi:10.1186/s12967-025-07345-x

Novosylna, O., Shalak, V., Dąbrowska, K., Patmanidis, I., Lozhko, D., Bondarchuk, T., Schiøtt, B., Pedersen, J. S., Knudsen, C. R., Nissen, P., Dadlez, M.and Negrutskii, B. (2025) Dynamics and structural features of the eEF1A1 and eEF1A2 paralogs. Nucleic Acids Research 53, doi:10.1093/nar/gkaf1177

Wojtyła, C., Kupcewicz, B., Tołwiński, I., Samborowska, E., Radkiewicz, M., Jaźwiec, R., Sakowicz, A., Rubel, T., Goszczynska, A., Winogradska, B.and Laudański, P. (2025) Metabolome analysis as a potential source of endometriosis biomarkers with the use of multiomics approach in its diagnosis. Sci Rep 15, doi:10.1038/s41598-025-22598-8

Nalepa, M., Basheer, O., Radkiewicz, M., Skowrońska, K., Skweres, A., Owczarek, A., Dalka, A., Hilgier, W., Zielińska, M., Samborowska, E.and Węgrzynowicz, M. (2025) Loss of arginase 2 disrupts striatum‐specific polyamine homeostasis. The FEBS Journal, doi:10.1111/febs.70313

Respekta‐Długosz, N., Pich, K., Rytelewska, E., Świderska, B., Malinowska, A., Chatys, J., Ramé, C., Dupont, J., Kamiński, T., Smolińska, N.and Rak, A. (2025) Integrated Transcriptomic and Proteomic Analysis of Omentin‐1 Effects on Primary Anterior Pituitary Cells From Different Pig Breeds: An In Vitro Study. The FASEB Journal 39, doi:10.1096/fj.202502202r

Kania, M., Drab, Z., Dąbrowska, M., Samborowska, E., Żeber-Lubecka, N., Kulecka, M., Klupa, T.and Gregorczyk-Maga, I. (2025) Impact of diet and nutritional status on gingival crevicular fluid metabolome and microbiome in people with type 1 diabetes: a cross-sectional study. Sci Rep 15, doi:10.1038/s41598-025-16690-2

Kamińska, K., Świderska, B., Malinowska, A., Barbasz, J.and Grzesiak, M. (2025) Vitamin D3 and insulin treatment affects porcine follicular fluid-derived extracellular vesicles characteristics and proteome cargo. Reproductive Biology 25, 101040. doi:10.1016/j.repbio.2025.101040

Blicharz, L., Samborowska, E., Zagożdżon, R., Czuwara, J., Zych, M., Roszczyk, A., Zaremba, M., Dadlez, M., Samochocki, Z., Olszewska, M.and Rudnicka, L. (2025) Food Sensitization Is Associated With Atopic Dermatitis Severity, Gut‐Derived Metabolites and Leaky Gut in Adults. Clinical & Translational All 15, doi:10.1002/clt2.70094

Onysk, A., Steczkiewicz, K., Radkiewicz, M., Link‐Lenczowski, P., Surowiecki, P., Sztompka, K., Grabińska, K. A., Nowak, J. K.and Surmacz, L. (2025) Evolutionary divergence and functional insights into the heteromeric cis‐prenyltransferase of Paramecium tetraurelia. The FEBS Journal, doi:10.1111/febs.70237

Pac-Sosińska, M., Palusińska-Szysz, M., Sztandera-Tymoczek, M., Świderska, U., Wdowiak-Wróbel, S., Malinowska, A., Świderska, B.and Szuster-Ciesielska, A. (2025) Biochemical characteristics of extracts from proallergenic microfungi Erysiphe Palczewskii and Erysiphe convolvuli. BMC Genomics 26, doi:10.1186/s12864-025-11862-w

Blicharz, L., Samborowska, E., Zagożdżon, R., Bukowska-Ośko, I., Czuwara, J., Zych, M., Roszczyk, A., Perlejewski, K., Makowska, K., Nowaczyk, J., Zaremba, M., Kazimierska, K., Waśkiel-Burnat, A., Dadlez, M., Samochocki, Z., Olszewska, M., Radkowski, M.and Rudnicka, L. (2025) Severity of atopic dermatitis is associated with gut-derived metabolites and leaky gut-related biomarkers. Sci Rep 15, doi:10.1038/s41598-025-09520-y

Szudzik, M., Zajdel, M., Samborowska, E., Perlejewski, K., Radkowski, M.and Ufnal, M. (2025) High-Fat Diet with Normal Caloric Intake Elevates TMA and TMAO Production and Reduces Microbial Diversity in Rats. Nutrients 17, 2230. doi:10.3390/nu17132230

Dietrich, M. A., Kodzik, N., Bakun, M., Szczepkowski, M.and Ciereszko, A. (2025) Phosphoproteomic profiling of Siberian sturgeon (Acipenser baerii, Brandt, 1869) sperm: insights into cryopreservation-induced changes with DMSO and methanol. Biology of Reproduction 113, 820–837. doi:10.1093/biolre/ioaf128

Gryciuk, A., Milner-Krawczyk, M., Rogalska, M., Banach, A. K., Sitkiewicz, E., Bakun, M., Świadek, M. E.and Mierzejewska, J. (2025) Characteristics of Two Saccharomyces cerevisiae Strains and Their Extracellular Vesicles as New Candidates for Probiotics. Probiotics & Antimicro. Prot., doi:10.1007/s12602-025-10624-0

Unrug-Bielawska, K., Sandowska-Markiewicz, Z., Pyśniak, K., Piątkowska, M., Czarnowski, P., Goryca, K., Mróz, A., Żeber-Lubecka, N., Wójcik-Trechcińska, U., Bałabas, A., Dąbrowska, M., Surynt, P., Radkiewicz, M., Mikula, M.and Ostrowski, J. (2025) Western Diet and fecal microbiota transplantation alter phenotypic, liver fatty acids, and gut metagenomics and metabolomics in Mtarc2 knockout mice. Genes Nutr 20, doi:10.1186/s12263-025-00772-x

Staehr, C., Login, H., Melnikova, E. V., Bakun, M., Ziemlinska, E., Kisiswa, L., Ardestani, S. B., Nolte, S. S., Beck, H. C., Hansen, L. M. B., Postnov, D., Verkhratsky, A., Malik, A. R., Nykjaer, A.and Matchkov, V. V. (2025) SorCS2 Is Important for Astrocytic Function in Neurovascular Signaling. Acta Physiologica 241, doi:10.1111/apha.70052

Linke, V., Chodkowski, M., Kaszuba, K., Radkiewicz, M., Schrader, T. A., Das, H., Rana, V., Stadnik, D., Dadlez, M., Warscheid, B., Schrader, M.and Chacinska, A. (2025) Integrated proteome and lipidome analyses place OCIAD1 at the mitochondria–peroxisome intersection balancing lipid metabolism. Journal of Cell Science 138, doi:10.1242/jcs.263729

Rybka, M., Mazurek, Ł., Jurak, J., Laskowska, A., Zajdel, M., Czuwara, J., Sulejczak, D., Szudzik, M., Samborowska, E., Schwartz, R. A., Dziadek, M., Salagierski, S., Drapała, A., Ufnal, M.and Konop, M. (2025) Keratin-TMAO dressing accelerates full-thickness skin wound healing in diabetic rats via M2-macrophage polarization and the activation of PI3K/AKT/mTOR signaling pathway. International Journal of Biological Macromolecules 310, 143313. doi:10.1016/j.ijbiomac.2025.143313

Bar, A., Berkowicz, P., Kurpinska, A., Mohaissen, T., Karaś, A., Kaczara, P., Suraj-Prażmowska, J., Sternak, M., Marczyk, B., Malinowska, A., Kij, A., Jasztal, A., Czyzynska-Cichon, I., Pieterman, E. J., Princen, H. M. G., Wiśniewski, J. R.and Chlopicki, S. (2025) Effects of life-long hyperlipidaemia on age-dependent development of endothelial dysfunction in humanised dyslipidaemic mice. GeroScience, doi:10.1007/s11357-025-01578-w

Marhelava, K., Fidyt, K., Pepek, M., Krawczyk, M., Forcados, C., Malinowska, A., Swiderska, B., Fernandez-Fuentes, N., Czerwik, N., Baranowska, I., Krzywdzinska, A., Sedek, L., Slota, L., Perkowski, B., Villatoro, A., Leray, T., Lech-Maranda, E., Menendez, P., Inderberg, E. M., Wälchli, S., Winiarska, M.and Firczuk, M. (2025) LILRB1-directed CAR-T cells for the treatment of hematological malignancies. Leukemia, doi:10.1038/s41375-025-02580-z

Sozańska, N., Klepka, B. P., Niedzwiecka, A., Zhukova, L., Dadlez, M., Greb-Markiewicz, B., Ożyhar, A.and Tarczewska, A. (2025) The molecular properties of the bHLH TCF4 protein as an intrinsically disordered hub transcription factor. Cell Commun Signal 23, doi:10.1186/s12964-025-02154-7

Puchała, W., Kistowski, M., Zhukova, L., Burdukiewicz, M.and Dadlez, M. (2025) HRaDeX: R Package and Web Server for Computing High-Resolution Deuterium Uptake Rates for HDX–MS Data. J. Proteome Res., doi:10.1021/acs.jproteome.4c00700

Cieplak-Rotowska, M. K., Dadlez, M.and Niedzwiecka, A. (2025) Exploring the CNOT1(800–999) HEAT Domain and Its Interactions with Tristetraprolin (TTP) as Revealed by Hydrogen/Deuterium Exchange Mass Spectrometry. Biomolecules 15, 403. doi:10.3390/biom15030403

Kamińska, K., Świderska, B., Malinowska, A.and Grzesiak, M. (2025) Tandem mass tag-based proteomic analysis of granulosa and theca interna cells of the porcine ovarian follicle following in vitro treatment with vitamin D3 and insulin alone or in combination. Journal of Proteomics 310, 105318. doi:10.1016/j.jprot.2024.105318

Deskur, A., Ambrożkiewicz, F., Samborowska, E., Błogowski, W., Sulikowski, T., Białek, A., Zawada, I., Dąbkowski, K., Mitrus, J., Karczmarski, J., Cybula, P., Paziewska, A.and Starzyńska, T. (2024) Plasma Bacterial Metabolites in Crohn’s Disease Pathogenesis and Complications. Nutrients 17, 74. doi:10.3390/nu17010074

Nynca, J., Bobe, J., Król, J., Ljubobratović, U., Palińska-Żarska, K., Malinowska, A., Świderska, B.and Żarski, D. (2024) Early postovulatory aging reveals the first proteomic markers of egg quality in pikeperch. Aquaculture 593, 741270. doi:10.1016/j.aquaculture.2024.741270

Kowalska, P., Mierzejewska, J., Skrzeszewska, P., Witkowska, A., Oksejuk, K., Sitkiewicz, E., Krawczyk, M., Świadek, M., Głuchowska, A., Marlicka, K., Sobiepanek, A.and Milner-Krawczyk, M. (2024) Extracellular vesicles of Janthinobacterium lividum as violacein carriers in melanoma cell treatment. Appl Microbiol Biotechnol 108, doi:10.1007/s00253-024-13358-1

Wertheim-Tysarowska, K., Osipowicz, K., Woźniak, K., Sawicka, J., Mika, A., Kutkowska-Kaźmierczak, A., Niepokój, K., Sobczyńska-Tomaszewska, A., Wawrzycki, B., Pietrzak, A., Śmigiel, R., Wojtaś, B., Gielniewski, B., Szabelska-Beresewicz, A., Zyprych-Walczak, J., Rygiel, A. M., Domaszewicz, A., Braun-Walicka, N., Grabarczyk, A., Rzońca-Niewczas, S., Lidia, R., Dawidziuk, M., Domański, D., Gambin, T., Jackiewicz, M., Duk, K., Dorożko, B., Szczygielski, O., Krześniak, N., Noszczyk, B. H., Obersztyn, E., Wierzba, J., Barczyk, A., Castaneda, J., Eckersdorf-Mastalerz, A., Jakubiuk-Tomaszuk, A., Własienko, P., Jaszczuk, I., Jezela-Stanek, A., Klapecki, J., van Geel, M., Kowalewski, C., Bal, J.and Gostyński, A. (2024) Molecular analysis of inherited disorders of cornification in polish patients show novel variants and functional data and provokes questions on the significance of secondary findings. Orphanet J Rare Dis 19, doi:10.1186/s13023-024-03395-4

Drohomirecka, A., Waś, J., Sitkiewicz, E., Świderska, B., Lutyńska, A., Rywik, T.and Zieliński, T. (2024) Exercise-Induced Proteomic Profile Changes in Patients with Advanced Heart Failure. Biomedicines 12, 2267. doi:10.3390/biomedicines12102267

Grzesiuk, M., Grabska, M., Malinowska, A., Świderska, B., Grzesiuk, E., Garbicz, D.and Gorecki, A. (2024) Daphnia stress response to environmental concentrations of chloramphenicol—multi-omics approach. Environ Sci Pollut Res, doi:10.1007/s11356-024-35045-4

Kodzik, N., Ciereszko, A., Judycka, S., Słowińska, M., Szczepkowska, B., Świderska, B.and Dietrich, M. A. (2024) Cryoprotectant-specific alterations in the proteome of Siberian sturgeon spermatozoa induced by cryopreservation. Sci Rep 14, doi:10.1038/s41598-024-68395-7

Kopij, G., Kiezun, M., Gudelska, M., Dobrzyn, K., Zarzecka, B., Rytelewska, E., Zaobidna, E., Swiderska, B., Malinowska, A., Rak, A., Kaminski, T.and Smolinska, N. (2024) Visfatin impact on the proteome of porcine luteal cells during implantation. Sci Rep 14, doi:10.1038/s41598-024-65577-1

Lenda, R., Zhukova, L., Ożyhar, A.and Bystranowska, D. (2024) Deciphering the dual nature of nesfatin-1: a tale of zinc ion’s Janus-faced influence. Cell Commun Signal 22, doi:10.1186/s12964-024-01675-x

Tempes, A., Bogusz, K., Brzozowska, A., Weslawski, J., Macias, M., Tkaczyk, O., Orzoł, K., Lew, A., Calka-Kresa, M., Bernas, T., Szczepankiewicz, A. A., Mlostek, M., Kumari, S., Liszewska, E., Machnicka, K., Bakun, M., Rubel, T., Malik, A. R.and Jaworski, J. (2024) Autophagy initiation triggers p150Glued–AP-2β interaction on the lysosomes and facilitates their transport. Cell. Mol. Life Sci. 81, doi:10.1007/s00018-024-05256-6

Kodzik, N., Ciereszko, A., Szczepkowska, B., Malinowska, A.and Dietrich, M. A. (2024) Comparative proteomic analysis of the ovarian fluid and eggs of Siberian sturgeon. BMC Genomics 25, doi:10.1186/s12864-024-10309-y

Ferenc, K., Marcinkowski, M., Olszewski, J., Kowalczyk, P., Pilžys, T., Garbicz, D., Dib, N., Świderska, B., Matyba, P., Gajewski, Z., Grzesiuk, E.and Zabielski, R. (2024) The proteomic profile is altered but not repaired after bariatric surgery in type 2 diabetes pigs. Sci Rep 14, doi:10.1038/s41598-024-60022-9

Dziedzic, A., Michlewska, S., Jóźwiak, P., Dębski, J., Karbownik, M. S., Łaczmański, Ł., Kujawa, D., Glińska, S., Miller, E., Niwald, M., Kloc, M., Balcerzak, Ł.and Saluk, J. (2024) Quantitative and structural changes of blood platelet cytoskeleton proteins in multiple sclerosis (MS). Journal of Autoimmunity 145, 103204. doi:10.1016/j.jaut.2024.103204

Balcerak, A., Szafron, L. A., Rubel, T., Swiderska, B., Bonna, A. M., Konarzewska, M., Sołtyszewski, I., Kupryjanczyk, J.and Szafron, L. M. (2024) A Multi-Faceted Analysis Showing CRNDE Transcripts and a Recently Confirmed Micropeptide as Important Players in Ovarian Carcinogenesis. IJMS 25, 4381. doi:10.3390/ijms25084381

Gawryś-Kopczyńska, M., Szudzik, M., Samborowska, E., Konop, M., Chabowski, D., Onyszkiewicz, M.and Ufnal, M. (2024) Spontaneously hypertensive rats exhibit increased liver flavin monooxygenase expression and elevated plasma TMAO levels compared to normotensive and Ang II-dependent hypertensive rats. Front. Physiol. 15, doi:10.3389/fphys.2024.1340166

Bugara, B., Durbas, M., Kudrycka, M., Malinowska, A., Horwacik, I.and Rokita, H. (2024) Silencing of the PHLDA1 leads to global proteome changes and differentiation pathways of human neuroblastoma cells. Front. Pharmacol. 15, doi:10.3389/fphar.2024.1351536

Das, A., Thapa, P., Santiago, U., Shanmugam, N., Banasiak, K., Dązbrowska, K., Nolte, H., Szulc, N. A., Gathungu, R. M., Cysewski, D., Krüeger, M., Dadlez, M., Nowotny, M., Camacho, C. J., Hoppe, T.and Pokrzywa, W. (2024) Author Correction: A heterotypic assembly mechanism regulates CHIP E3 ligase activity. EMBO J, doi:10.1038/s44318-024-00042-3

Gregorczyk-Maga, I., Kania, M., Dąbrowska, M., Samborowska, E., Żeber-Lubecka, N., Kulecka, M.and Klupa, T. (2024) The interplay between gingival crevicular fluid microbiome and metabolomic profile in intensively treated people with type 1 diabetes - a combined metagenomic/metabolomic approach cross-sectional study. Front. Endocrinol. 14, doi:10.3389/fendo.2023.1332406

Maksymiuk, K. M., Szudzik, M., Samborowska, E., Chabowski, D., Konop, M.and Ufnal, M. (2024) Mice, rats, and guinea pigs differ in FMOs expression and tissue concentration of TMAO, a gut bacteria-derived biomarker of cardiovascular and metabolic diseases. PLoS ONE 19, e0297474. doi:10.1371/journal.pone.0297474

Ostrowska, J., Samborowska, E., Jaworski, M., Toczyłowska, K.and Szostak-Węgierek, D. (2024) The Potential Role of SCFAs in Modulating Cardiometabolic Risk by Interacting with Adiposity Parameters and Diet. Nutrients 16, 266. doi:10.3390/nu16020266

Mogilnicka, I., Jaworska, K., Koper, M., Maksymiuk, K., Szudzik, M., Radkiewicz, M., Chabowski, D.and Ufnal, M. (2024) Hypertensive rats show increased renal excretion and decreased tissue concentrations of glycine betaine, a protective osmolyte with diuretic properties. PLoS ONE 19, e0294926. doi:10.1371/journal.pone.0294926

Młodzińska-Michta, E., Swiezewska, E., Hoffman-Sommer, M., Piłka, N., Radkiewicz, M.and Jarzembowski, P. (2023) Adaptation of the maize seedling seminal roots to srought: Essential role of plasma membrane H+-ATPases activity. Acta Soc Bot Pol 92, 1–15. doi:10.5586/asbp/177274

Zurawska, M., Basik, M., Aguilar-Mahecha, A., Dadlez, M.and Domanski, D. (2023) A micro-flow, high-pH, reversed-phase peptide fractionation and collection system for targeted and in-depth proteomics of low-abundance proteins in limiting samples. MethodsX 11, 102306. doi:10.1016/j.mex.2023.102306

Mucha, O., Myszka, M., Podkalicka, P., Świderska, B., Malinowska, A., Dulak, J.and Łoboda, A. (2023) Proteome Profiling of the Dystrophic mdx Mice Diaphragm. Biomolecules 13, 1648. doi:10.3390/biom13111648

Morcinek-Orłowska, J., Walter, B., Forquet, R., Cysewski, D., Carlier, M., Mozolewski, M., Meyer, S.and Glinkowska, M. (2023) Interaction networks of Escherichia coli replication proteins under different bacterial growth conditions. Sci Data 10, doi:10.1038/s41597-023-02710-1

Jelen, M., Grochowina, I., Grabinska-Rogala, A., Ciesielski, S. J., Dabrowska, K., Tomiczek, B., Nierzwicki, L., Delewski, W., Schilke, B., Czub, J., Dadlez, M., Dutkiewicz, R., Craig, E. A.and Marszalek, J. (2023) Analysis of Reconstituted Tripartite Complex Supports Avidity-based Recruitment of Hsp70 by Substrate Bound J-domain Protein. Journal of Molecular Biology 435, 168283. doi:10.1016/j.jmb.2023.168283

Yang, X.-. cui ., Desotell, A., Lin, M.-H., Paige, A. S., Malinowska, A., Sun, Y., Aik, W. S., Dadlez, M., Tong, L.and Dominski, Z. (2023) In vitro methylation of the U7 snRNP subunits Lsm11 and SmE by the PRMT5/MEP50/pICln methylosome. RNA, rna.079709.123. doi:10.1261/rna.079709.123

Olek, R. A., Samborowska, E., Wisniewski, P., Wojtkiewicz, P., Wochna, K.and Zielinski, J. (2023) Effect of a 3-month L-carnitine supplementation and resistance training program on circulating markers and bone mineral density in postmenopausal women: a randomized controlled trial. Nutr Metab (Lond) 20, doi:10.1186/s12986-023-00752-1

Gregorczyk, P., Porębska, N., Żukowska, D., Chorążewska, A., Gędaj, A., Malinowska, A., Otlewski, J., Zakrzewska, M.and Opaliński, Ł. (2023) N-glycosylation acts as a switch for FGFR1 trafficking between the plasma membrane and nuclear envelope. Cell Commun Signal 21, doi:10.1186/s12964-023-01203-3

Borek, S., Stefaniak, S., Nuc, K., Wojtyla, Ł., Ratajczak, E., Sitkiewicz, E., Malinowska, A., Świderska, B., Wleklik, K.and Pietrowska-Borek, M. (2023) Sugar Starvation Disrupts Lipid Breakdown by Inducing Autophagy in Embryonic Axes of Lupin (Lupinus spp.) Germinating Seeds. IJMS 24, 11773. doi:10.3390/ijms241411773

Nguyen, M. N., Chakraborty, D., Rao, S. R., Onysk, A., Radkiewicz, M., Surmacz, L., Swiezewska, E., Soubeyrand, E., Akhtar, T. A., Kraft, T. W., Sherry, D. M., Fliesler, S. J.and Pittler, S. J. (2023) A Dhdds K42E knock-in RP59 mouse model shows inner retina pathology and defective synaptic transmission. Cell Death Dis 14, doi:10.1038/s41419-023-05936-4

Mierzejewska, J., Kowalska, P., Marlicka, K., Dworakowska, S., Sitkiewicz, E., Trzaskowski, M., Głuchowska, A., Mosieniak, G.and Milner-Krawczyk, M. (2023) Exploring Extracellular Vesicles of Probiotic Yeast as Carriers of Biologically Active Molecules Transferred to Human Intestinal Cells. IJMS 24, 11340. doi:10.3390/ijms241411340

Kamińska, K., Godakumara, K., Świderska, B., Malinowska, A., Midekessa, G., Sofińska, K., Barbasz, J., Fazeli, A.and Grzesiak, M. (2023) Characteristics of size-exclusion chromatography enriched porcine follicular fluid extracellular vesicles. Theriogenology 205, 79–86. doi:10.1016/j.theriogenology.2023.04.010

Skubisz, K., Dąbkowski, K., Samborowska, E., Starzyńska, T., Deskur, A., Ambrozkiewicz, F., Karczmarski, J., Radkiewicz, M., Kusnierz, K., Kos-Kudła, B., Sulikowski, T., Cybula, P.and Paziewska, A. (2023) Serum Metabolite Biomarkers for Pancreatic Tumors: Neuroendocrine and Pancreatic Ductal Adenocarcinomas—A Preliminary Study. Cancers 15, 3242. doi:10.3390/cancers15123242

Łupkowska, A., Monem, S., Dębski, J., Stojowska-Swędrzyńska, K., Kuczyńska-Wiśnik, D.and Laskowska, E. (2023) Protein aggregation and glycation in Escherichia coli exposed to desiccation-rehydration stress. Microbiological Research 270, 127335. doi:10.1016/j.micres.2023.127335

Batycka, M., Lange, E., Ehmke vel Emczyńska-Seliga, E., Jaworski, M., Kobylińska, M., Lech, N., Samborowska, E., Lipiński, P., Perkowska, B., Pokora, P.and Rokicki, D. (2023) Relationship between Bone Mineral Density and Selected Parameters of Calcium-Phosphate Economy with Dietary Management and Metabolic Control in Polish Pediatric Patients with Classical Homocystinuria—A Preliminary Study. Nutrients 15, 2112. doi:10.3390/nu15092112

Kodzik, N., Ciereszko, A., Szczepkowski, M., Karol, H., Judycka, S., Malinowska, A., Świderska, B.and Dietrich, M. A. (2023) Comprehensive proteomic characterization and functional annotation of Siberian sturgeon seminal plasma proteins. Aquaculture 568, 739326. doi:10.1016/j.aquaculture.2023.739326

Polakowska, M., Steczkiewicz, K., Szczepanowski, R. H.and Wysłouch-Cieszyńska, A. (2023) Toward an understanding of the conformational plasticity of S100A8 and S100A9 Ca2+-binding proteins. Journal of Biological Chemistry 299, 102952. doi:10.1016/j.jbc.2023.102952

Szlęzak, D., Ufnal, M., Drapała, A., Samborowska, E.and Wróbel, M. (2023) Urinary excretion of asymmetric (ADMA) and symmetric (SDMA) dimethylarginine is positively related to nitric oxide level in tissues of normotensive and hypertensive rats. Amino Acids, doi:10.1007/s00726-023-03246-9

Nynca, J., Malinowska, A., Świderska, B., Wiśniewska, J., Dobosz, S.and Ciereszko, A. (2023) Triploidization of rainbow trout affects proteins related to ovary development and reproductive activity. Aquaculture 565, 739145. doi:10.1016/j.aquaculture.2022.739145

Samborowska, E.and Olek, R. A. (2023) Twenty-Four Weeks of L-Carnitine Combined with Leucine Supplementation Does Not Increase the Muscle Carnitine Content in Healthy Active Subjects. Ann Nutr Metab 79, 51–59. doi:10.1159/000529333

Negrutskii, B. S., Porubleva, L. V., Malinowska, A., Novosylna, O. V., Dadlez, M.and Knudsen, C. R. (2023) Understanding functions of eEF1 translation elongation factors beyond translation. A proteomic approach. Advances in Protein Chemistry and Structural Biology, doi:10.1016/bs.apcsb.2023.10.001

Tomasova, L., Maksymiuk, K., Chabowski, D., Samborowska, E.and Ufnal, M. (2023) Mice, Rats and Guinea Pigs Exhibit Significant Variations in the Plasma, Urine and Tissue Levels of Taurine, Betaine, Sarcosine and Other Osmolyte-Active Amino Acids. Discovery Medicine 35, 492. doi:10.24976/discov.med.202335177.50

Mielecki, D., Grzesiuk, E., Bednarska, A., Garbicz, D., Świderska, B.and Grzesiuk, M. (2023) Contamination of aquatic environment with anticancer reagents influences Daphnia magna – Ecotoxicogenomics approach. Ecotoxicology and Environmental Safety 249, 114372. doi:10.1016/j.ecoenv.2022.114372

Marhelava, K., Fidyt, K., Malinowska, A., Swiderska, B., Pepek, M., Pastorczak, A. K., Kraft, A., Winiarska, M.and Firczuk, M. (2022) Optimized Method for Cell Surface Protein Identification on Primary B-Cell Precursor Acute Lymphoblastic Leukemia Cells. Blood 140, 11519–11520. doi:10.1182/blood-2022-160084

Winiewska-Szajewska, M., Czapinska, H., Kaus-Drobek, M., Fricke, A., Mieczkowska, K., Dadlez, M., Bochtler, M.and Poznański, J. (2022) Competition between electrostatic interactions and halogen bonding in the protein–ligand system: structural and thermodynamic studies of 5,6-dibromobenzotriazole-hCK2α complexes. Sci Rep 12, doi:10.1038/s41598-022-23611-0

Konop, M., Rybka, M., Szudzik, M., Mazurek, Ł., Laskowska, A. K., Sulejczak, D., Ruszczak, Z., Mazgaj, R., Cieślik, B., Schwartz, R. A., Samborowska, E., Frankowski, J., Waszkowski, A., Konopelski, P.and Czuwara, J. (2022) Keratin-Butyrate Scaffolds Promote Skin Wound Healing in Diabetic Rats Through Down-Regulation of IL-1β and Up-Regulation of Keratins 16 and 17. Journal of Natural Fibers, 1–16. doi:10.1080/15440478.2022.2136325

Maksymiuk, K. M., Szudzik, M., Gawryś-Kopczyńska, M., Onyszkiewicz, M., Samborowska, E., Mogilnicka, I.and Ufnal, M. (2022) Trimethylamine, a gut bacteria metabolite and air pollutant, increases blood pressure and markers of kidney damage including proteinuria and KIM-1 in rats. J Transl Med 20, doi:10.1186/s12967-022-03687-y

Sawicka, A. K., Jaworska, J., Brzeska, B., Sabisz, A., Samborowska, E., Radkiewicz, M., Szurowska, E., Winklewski, P. J., Szarmach, A.and Olek, R. A. (2022) L-Carnitine Combined with Leucine Supplementation Does Not Improve the Effectiveness of Progressive Resistance Training in Healthy Aged Women. J Nutr Health Aging 26, 945–953. doi:10.1007/s12603-022-1848-y

Pranke, I. M., Chevalier, B., Premchandar, A., Baatallah, N., Tomaszewski, K. F., Bitam, S., Tondelier, D., Golec, A., Stolk, J., Lukacs, G. L., Hiemstra, P. S., Dadlez, M., Lomas, D. A., Irving, J. A., Delaunay-Moisan, A., van Anken, E., Hinzpeter, A., Sermet-Gaudelus, I.and Edelman, A. (2022) Keratin 8 is a scaffolding and regulatory protein of ERAD complexes. Cell. Mol. Life Sci. 79, doi:10.1007/s00018-022-04528-3

Bondarchuk, T. V., Shalak, V. F., Lozhko, D. M., Fatalska, A., Szczepanowski, R. H., Liudkovska, V., Tsuvariev, O. Y., Dadlez, M., El'skaya, A. V.and Negrutskii, B. S. (2022) Quaternary organization of the human eEF1B complex reveals unique multi-GEF domain assembly. Nucleic Acids Research 50, 9490–9504. doi:10.1093/nar/gkac685

Dietrich, M. A., Adamek, M., Teitge, F., Teich, L., Jung-Schroers, V., Malinowska, A., Świderska, B., Rakus, K., Kodzik, N., Chadzińska, M., Karol, H., Liszewska, E.and Ciereszko, A. (2022) Proteomic analysis of carp seminal plasma provides insights into the immune response to bacterial infection of the male reproductive system. Fish & Shellfish Immunology 127, 822–835. doi:10.1016/j.fsi.2022.07.019

Das, A., Thapa, P., Santiago, U., Shanmugam, N., Banasiak, K., Dąbrowska, K., Nolte, H., Szulc, N. A., Gathungu, R. M., Cysewski, D., Krüger, M., Dadlez, M., Nowotny, M., Camacho, C. J., Hoppe, T.and Pokrzywa, W. (2022) A heterotypic assembly mechanism regulates CHIP E3 ligase activity. The EMBO Journal 41, doi:10.15252/embj.2021109566

Tempes, A., Bogusz, K., Brzozowska, A., Weslawski, J., Macias, M., Lew, A., Calka-Kresa, M., Bernas, T., Szczepankiewicz, A. A., Bakun, M., Rubel, T., Malik, A. R.and Jaworski, J. (2022) Dynactin interaction with AP-2 adaptor complex requires CLIP-170 and autophagy. [], doi:10.1101/2022.06.19.496704

Zaręba-Kozioł, M., Burdukiewicz, M.and Wysłouch-Cieszyńska, A. (2022) Intracellular Protein S-Nitrosylation—A Cells Response to Extracellular S100B and RAGE Receptor. Biomolecules 12, 613. doi:10.3390/biom12050613

Orzechowska, K., Dobrzyń, K., Kieżun, M., Malinowska, A., Świderska, B., Kamiński, T.and Smolińska, N. (2022) Chemerin Effect on the Endometrial Proteome of the Domestic Pig during Implantation Obtained by LC-MS/MS Analysis. Cells 11, 1161. doi:10.3390/cells11071161

Robak, A., Kistowski, M., Wojtas, G., Perzanowska, A., Targowski, T., Michalak, A., Krasowski, G., Dadlez, M.and Domański, D. (2022) Diagnosing pleural effusions using mass spectrometry-based multiplexed targeted proteomics quantitating mid- to high-abundance markers of cancer, infection/inflammation and tuberculosis. Sci Rep 12, doi:10.1038/s41598-022-06924-y

Gawryś, K., Turek-Jakubowska, A., Gawryś, J., Jakubowski, M., Dębski, J., Szahidewicz-Krupska, E., Trocha, M., Derkacz, A.and Doroszko, A. (2022) Platelet-Derived Drug Targets and Biomarkers of Ischemic Stroke—The First Dynamic Human LC-MS Proteomic Study. JCM 11, 1198. doi:10.3390/jcm11051198

Gielnik, M., Zhukova, L., Zhukov, I., Gräslund, A., Kozak, M.and Wärmländer, S. (2022) The engineered peptide construct NCAM1-Aβ inhibits fibrillization of the human prion protein (PrP). Acta Biochim Pol, doi:10.18388/abp.2020_5679

Dubińska-Magiera, M., Lewandowski, D., Cysewski, D., Pawlak, S., Najbar, B.and Daczewska, M. (2022) Lipid droplets in skeletal muscle during grass snake (Natrix natrix L.) development. Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids 1867, 159086. doi:10.1016/j.bbalip.2021.159086

Turek-Jakubowska, A., Dębski, J., Jakubowski, M., Szahidewicz-Krupska, E., Gawryś, J., Gawryś, K., Janus, A., Trocha, M.and Doroszko, A. (2022) New Candidates for Biomarkers and Drug Targets of Ischemic Stroke—A First Dynamic LC-MS Human Serum Proteomic Study. JCM 11, 339. doi:10.3390/jcm11020339

Karbownik, A., Szkutnik-Fiedler, D., Grabowski, T., Wolc, A., Stanisławiak-Rudowicz, J., Jaźwiec, R., Grześkowiak, E.and Szałek, E. (2021) Pharmacokinetic Drug Interaction Study of Sorafenib and Morphine in Rats. Pharmaceutics 13, 2172. doi:10.3390/pharmaceutics13122172

Banaś, A. M., Bocian-Ostrzycka, K. M., Dunin-Horkawicz, S., Ludwiczak, J., Wilk, P., Orlikowska, M., Wyszyńska, A., Dąbrowska, M., Plichta, M., Spodzieja, M., Polańska, M. A., Malinowska, A.and Jagusztyn-Krynicka, E. K. (2021) Interplay between DsbA1, DsbA2 and C8J_1298 Periplasmic Oxidoreductases of Campylobacter jejuni and Their Impact on Bacterial Physiology and Pathogenesis. IJMS 22, 13451. doi:10.3390/ijms222413451

Ziemlińska, E., Sobocińska, J., Świątkowska, A., Hromada-Judycka, A., Traczyk, G., Malinowska, A., Świderska, B., Mietelska-Porowska, A., Ciesielska, A.and Kwiatkowska, K. (2021) Palm Oil-Rich Diet Affects Murine Liver Proteome and S-Palmitoylome. IJMS 22, 13094. doi:10.3390/ijms222313094

Ludwikowska, K. M., Okarska-Napierała, M., Dudek, N., Tracewski, P., Kusa, J., Piwoński, K. P., Afelt, A., Cysewski, D., Biela, M., Werner, B., Jackowska, T., Suski-Grabowski, C., Kursa, M. B., Kuchar, E., Szenborn, L., Barszcz, M., Berdej-Szczot, E., Brzuszkiewicz, S., Buda, P., Czajka, A., Czech, A., Czerwińska, E., Figlerowicz, M., Firek-Pędras, M., Gawlik, A., Gowin, E., Izdebska, O., Januszkiewicz-Lewandowska, D., Kiepuszka, J., Koczwara, A., Koszałko, D., Kośmider-Żurawska, M., Książyk, J., Kucińska, B., Kukawska, M., Lackowska, A., Łapacz, K., Maliszak, A., Mania, A., Mańdziuk, J., Mazur, A., Mazur-Melewska, K., Niszczota, C., Opalińska-Zielonka, P., Pałyga-Bysiecka, I., Rojewska, K., Rożnowska-Wójtowicz, A., Siewert, B., Sobiczewska, P., Stopyra, L., Stroba-Żelek, A., Stryczyńska-Kazubska, J., Szatkowski, T., Szczepańska, B., Szczukocki, M., Szylo, R., Tyc, F., Wielgos, K., Wołowska, E., Wysocki, J., Zacharzewska, A., Zaniew, M., Zielińska, M., Zięba-Glonek, K.and (2021) Distinct characteristics of multisystem inflammatory syndrome in children in Poland. Sci Rep 11, doi:10.1038/s41598-021-02669-2

Lisowska-Myjak, B., Zborowska, H., Jaźwiec, R., Karlińska, M.and Skarżyńska, E. (2021) Serum indoxyl sulphate and its relation to albumin and α1-acid  glycoprotein as a potential biomarkers of maternal intestinal metabolism  during pregnancy and postpartum. PLoS ONE 16, e0259501. doi:10.1371/journal.pone.0259501

Płonka, D., Kotuniak, R., Dąbrowska, K.and Bal, W. (2021) Electrospray-Induced Mass Spectrometry Is Not Suitable for Determination of Peptidic Cu(II) Complexes. J. Am. Soc. Mass Spectrom. 32, 2766–2776. doi:10.1021/jasms.1c00206

Rozek, W., Kwasnik, M., Malinowska, A., Stasiak, K., Larska, M.and Rola, J. (2021) Proteomic analysis of the secretome of equine herpesvirus-1 infected rabbit kidney cells. Research in Veterinary Science 140, 134–141. doi:10.1016/j.rvsc.2021.08.014

Przyborowski, K., Kurpinska, A., Wojkowska, D., Kaczara, P., Suraj‐Prazmowska, J., Karolczak, K., Malinowska, A., Pelesz, A., Kij, A., Kalvins, I., Watala, C.and Chlopicki, S. (2021) Protein disulfide isomerase‐A1 regulates intraplatelet reactive oxygen species–thromboxane A 2 ‐dependent pathway in human platelets. J Thromb Haemost, doi:10.1111/jth.15539

Marcinkowski, M., Pilžys, T., Garbicz, D., Piwowarski, J., Przygońska, K., Winiewska-Szajewska, M., Ferenc, K., Skorobogatov, O., Poznański, J.and Grzesiuk, E. (2021) Calmodulin as Ca2+-Dependent Interactor of FTO Dioxygenase. IJMS 22, 10869. doi:10.3390/ijms221910869

Jasiecki, J., Szczoczarz, A., Cysewski, D., Lewandowski, K., Skowron, P., Waleron, K.and Wasąg, B. (2021) Butyrylcholinesterase–Protein Interactions in Human Serum. IJMS 22, 10662. doi:10.3390/ijms221910662

Gutkowska, M., Kaus‐Drobek, M., Hoffman‐Sommer, M., Pamuła, M. M., Leja, A. D., Perycz, M., Lichocka, M., Witek, A., Wojtas, M., Dadlez, M., Swiezewska, E.and Surmacz, L. (2021) Impact of C‐terminal truncations in the Arabidopsis Rab Escort Protein (REP) on REP‐Rab interaction and plant fertility. Plant J, doi:10.1111/tpj.15519

Wojtyś, M. I., Jaźwiec, R., Kazazić, S., Leščić Ašler, I., Knežević, P., Aleksić Sabo, V., Luić, M., Jagusztyn-Krynicka, E. K.and Bzowska, A. (2021) A comprehensive method for determining cellular uptake of purine nucleoside phosphorylase and adenylosuccinate synthetase inhibitors by H. pylori. Appl Microbiol Biotechnol, doi:10.1007/s00253-021-11510-9

Mucha, O., Podkalicka, P., Kaziród, K., Samborowska, E., Dulak, J.and Łoboda, A. (2021) Simvastatin does not alleviate muscle pathology in a mouse model of Duchenne muscular dystrophy. Skeletal Muscle 11, doi:10.1186/s13395-021-00276-3

Jancewicz, I., Szarkowska, J., Konopinski, R., Stachowiak, M., Swiatek, M., Blachnio, K., Kubala, S., Oksinska, P., Cwiek, P., Rusetska, N., Tupalska, A., Zeber-Lubecka, N., Grabowska, E., Swiderska, B., Malinowska, A., Mikula, M., Jagielska, B., Walewski, J., Siedlecki, J. A., Sarnowski, T. J., Markowicz, S.and Sarnowska, E. A. (2021) PD-L1 Overexpression, SWI/SNF Complex Deregulation, and Profound Transcriptomic Changes Characterize Cancer-Dependent Exhaustion of Persistently Activated CD4+ T Cells. Cancers 13, 4148. doi:10.3390/cancers13164148

Sosnowska, M., Kutwin, M., Strojny, B., Wierzbicki, M., Cysewski, D., Szczepaniak, J., Ficek, M., Koczoń, P., Jaworski, S., Chwalibog, A.and Sawosz, E. (2021) Diamond Nanofilm Normalizes Proliferation and Metabolism in Liver Cancer Cells. NSA Volume 14, 115–137. doi:10.2147/nsa.s322766

Dietrich, M. A., Judycka, S., Żarski, D., Malinowska, A., Świderska, B., Palińska-Żarska, K., Błażejewski, M.and Ciereszko, A. (2021) Proteomic analysis of pikeperch seminal plasma provides novel insight into the testicular development of domesticated fish stocks. Animal 15, 100279. doi:10.1016/j.animal.2021.100279

Joachimiak, E., Osinka, A., Farahat, H., Świderska, B., Sitkiewicz, E., Poprzeczko, M., Fabczak, H.and Wloga, D. (2021) Composition and function of the C1b/C1f region in the ciliary central apparatus. Sci Rep 11, doi:10.1038/s41598-021-90996-9

Jankowska, U., Skupien-Rabian, B., Swiderska, B., Prus, G., Dziedzicka-Wasylewska, M.and Kedracka-Krok, S. (2021) Proteome Analysis of PC12 Cells Reveals Alterations in Translation Regulation and Actin Signaling Induced by Clozapine. Neurochem Res, doi:10.1007/s11064-021-03348-4

Asaro, A., Sinha, R., Bakun, M., Kalnytska, O., Carlo-Spiewok, A.-S., Rubel, T., Rozeboom, A., Dadlez, M., Kaminska, B., Aronica, E., Malik, A. R.and Willnow, T. E. (2021) ApoE4 disrupts interaction of sortilin with fatty acid-binding protein 7 essential to promote lipid signaling. [], doi:10.1101/2021.05.20.444938

Figura, M., Sitkiewicz, E., Świderska, B., Milanowski, Ł., Szlufik, S., Koziorowski, D.and Friedman, A. (2021) Proteomic Profile of Saliva in Parkinson’s Disease Patients: A Proof of Concept Study. Brain Sciences 11, 661. doi:10.3390/brainsci11050661

Sikora, M., Kiss, N., Stec, A., Giebultowicz, J., Samborowska, E., Jazwiec, R., Dadlez, M., Olszewska, M.and Rudnicka, L. (2021) Trimethylamine N-Oxide, a Gut Microbiota-Derived Metabolite, Is Associated with Cardiovascular Risk in Psoriasis: A Cross-Sectional Pilot Study. Dermatol Ther (Heidelb), doi:10.1007/s13555-021-00547-3

Marcinkowski, M., Pilžys, T., Garbicz, D., Piwowarski, J., Mielecki, D., Nowaczyk, G., Taube, M., Gielnik, M., Kozak, M., Winiewska-Szajewska, M., Szołajska, E., Dębski, J., Maciejewska, A. M., Przygońska, K., Ferenc, K., Grzesiuk, E.and Poznański, J. (2021) Effect of Posttranslational Modifications on the Structure and Activity of FTO Demethylase. IJMS 22, 4512. doi:10.3390/ijms22094512

Mazur, M., Wojciechowska, D., Sitkiewicz, E., Malinowska, A., Świderska, B., Kmita, H.and Wojtkowska, M. (2021) Mitochondrial Processes during Early Development of Dictyostelium discoideum: From Bioenergetic to Proteomic Studies. Genes 12, 638. doi:10.3390/genes12050638

Konopelski, P., Konop, M., Perlejewski, K., Bukowska-Osko, I., Radkowski, M., Onyszkiewicz, M., Jaworska, K., Mogilnicka, I., Samborowska, E.and Ufnal, M. (2021) Genetically determined hypertensive phenotype affects gut microbiota composition, but not vice versa. Journal of Hypertension Publish Ahead of Print, doi:10.1097/hjh.0000000000002864

Perła-Kaján, J., Malinowska, A., Zimny, J., Cysewski, D., Suszyńska-Zajczyk, J.and Jakubowski, H. (2021) Proteome-Wide Analysis of Protein Lysine N-Homocysteinylation in Saccharomyces cerevisiae. J. Proteome Res., doi:10.1021/acs.jproteome.0c00937

Gewartowska, O., Aranaz-Novaliches, G., Krawczyk, P. S., Mroczek, S., Kusio-Kobiałka, M., Tarkowski, B., Spoutil, F., Benada, O., Kofroňová, O., Szwedziak, P., Cysewski, D., Gruchota, J., Szpila, M., Chlebowski, A., Sedlacek, R., Prochazka, J.and Dziembowski, A. (2021) Cytoplasmic polyadenylation by TENT5A is required for proper bone formation. Cell Reports 35, 109015. doi:10.1016/j.celrep.2021.109015

Moysa, A., Steczkiewicz, K., Niedzialek, D., Hammerschmid, D., Zhukova, L., Sobott, F.and Dadlez, M. (2021) A model of full-length RAGE in complex with S100B. Structure, doi:10.1016/j.str.2021.04.002

Fatalska, A., Stepinac, E., Richter, M., Kovacs, L., Pietras, Z., Puchinger, M., Dong, G., Dadlez, M.and Glover, D. M. (2021) The dimeric Golgi protein Gorab binds to Sas6 as a monomer to mediate centriole duplication. eLife 10, doi:10.7554/elife.57241

Łabuz, J., Sztatelman, O., Jagiełło-Flasińska, D., Hermanowicz, P., Bażant, A., Banaś, A. K., Bartnicki, F., Giza, A., Kozłowska, A., Lasok, H., Sitkiewicz, E., Krzeszowiec, W., Gabryś, H.and Strzałka, W. (2021) Phototropin Interactions with SUMO Proteins. Plant and Cell Physiology, doi:10.1093/pcp/pcab027

Adamczyk, M., Lewicka, E., Szatkowska, R., Nieznanska, H., Ludwiczak, J., Jasiński, M., Dunin-Horkawicz, S., Sitkiewicz, E., Swiderska, B., Goch, G.and Jagura-Burdzy, G. (2021) Revealing biophysical properties of KfrA-type proteins as a novel class of cytoskeletal, coiled-coil plasmid-encoded proteins. BMC Microbiol 21, doi:10.1186/s12866-020-02079-w

Olkowicz, M., Czyzynska-Cichon, I., Szupryczynska, N., Kostogrys, R. B., Kochan, Z., Debski, J., Dadlez, M., Chlopicki, S.and Smolenski, R. T. (2021) Multi-omic signatures of atherogenic dyslipidaemia: pre-clinical target identification and validation in humans. J Transl Med 19, doi:10.1186/s12967-020-02663-8

Olkowicz, M., Tomczyk, M., Debski, J., Tyrankiewicz, U., Przyborowski, K., Borkowski, T., Zabielska-Kaczorowska, M., Szupryczynska, N., Kochan, Z., Smeda, M., Dadlez, M., Chlopicki, S.and Smolenski, R. T. (2021) Enhanced cardiac hypoxic injury in atherogenic dyslipidaemia results from alterations in the energy metabolism pattern. Metabolism 114, 154400. doi:10.1016/j.metabol.2020.154400

Sikora, M., Stec, A., Chrabaszcz, M., Giebultowicz, J., Samborowska, E., Jazwiec, R., Dadlez, M., Olszewska, M.and Rudnicka, L. (2021) Clinical Implications of Intestinal Barrier Damage in Psoriasis. JIR Volume 14, 237–243. doi:10.2147/jir.s292544

Bystranowska, D., Skorupska, A., Sołtys, K., Padjasek, M., Krężel, A., Żak, A., Kaus-Drobek, M., Taube, M., Kozak, M.and Ożyhar, A. (2021) Nucleobindin-2 consists of two structural components: The Zn2+-sensitive N-terminal half, consisting of nesfatin-1 and -2, and the Ca2+-sensitive C-terminal half, consisting of nesfatin-3. Computational and Structural Biotechnology Journal 19, 4300–4318. doi:10.1016/j.csbj.2021.07.036

Fatalska, A., Rusetska, N., Bakuła-Zalewska, E., Kowalik, A., Zięba, S., Wroblewska, A., Zalewski, K., Goryca, K., Domański, D.and Kowalewska, M. (2020) Inflammatory Proteins HMGA2 and PRTN3 as Drivers of Vulvar Squamous Cell Carcinoma Progression. Cancers 13, 27. doi:10.3390/cancers13010027

Karman, Z., Rethi-Nagy, Z., Abraham, E., Fabri-Ordogh, L., Csonka, A., Vilmos, P., Debski, J., Dadlez, M., Glover, D. M.and Lipinszki, Z. (2020) Novel perspectives of target-binding by the evolutionarily conserved PP4 phosphatase. Open Biol. 10, 200343. doi:10.1098/rsob.200343

Fatalska, A., Dzhindzhev, N. S., Dadlez, M.and Glover, D. M. (2020) Interaction interface in the C-terminal parts of centriole proteins Sas6 and Ana2. Open Biol. 10, 200221. doi:10.1098/rsob.200221

Karbownik, A., Miedziaszczyk, M., Grabowski, T., Stanisławiak-Rudowicz, J., Jaźwiec, R., Wolc, A., Grześkowiak, E.and Szałek, E. (2020) In vivo assessment of potential for UGT-inhibition-based drug-drug interaction between sorafenib and tapentadol. Biomedicine & Pharmacotherapy 130, 110530. doi:10.1016/j.biopha.2020.110530

Zurawska, M., Basik, M., Dadlez, M.and Domanski, D. (2020) Development of a multiplexed protein panel using a targeted proteomics approach for the study of CDK4/6 inhibitors resistance in hormone receptor positive breast cancer. European Journal of Cancer 138, S120. doi:10.1016/s0959-8049(20)30860-1

Zarzecka, U., Grinzato, A., Kandiah, E., Cysewski, D., Berto, P., Skorko-Glonek, J., Zanotti, G.and Backert, S. (2020) Functional analysis and cryo-electron microscopy of Campylobacter jejuni serine protease HtrA. Gut Microbes 12, 1–16. doi:10.1080/19490976.2020.1810532

Witkiewicz-Kucharczyk, A., Goch, W., Olędzki, J., Hartwig, A.and Bal, W. (2020) The Reactions of H2O2 and GSNO with the Zinc Finger Motif of XPA. Not A Regulatory Mechanism, But No Synergy with Cadmium Toxicity. Molecules 25, 4177. doi:10.3390/molecules25184177

Skrzypecki, J., Izdebska, J., Kamińska, A., Badowska, J., Przybek-Skrzypecka, J., Bombuy, J., Samborowska, E.and Szaflik, J. P. (2020) Glaucoma patients have an increased level of trimethylamine, a toxic product of gut bacteria, in the aqueous humor: a pilot study. Int Ophthalmol, doi:10.1007/s10792-020-01587-y

Kociszewska-Najman, B., Mazanowska, N., Borek-Dzięcioł, B., Pączek, L., Samborowska, E., Szpotańska-Sikorska, M., Pietrzak, B., Dadlez, M.and Wielgoś, M. (2020) Low Content of Cyclosporine A and Its Metabolites in the Colostrum of Post-Transplant Mothers. Nutrients 12, 2713. doi:10.3390/nu12092713

Drapala, A., Szudzik, M., Chabowski, D., Mogilnicka, I., Jaworska, K., Kraszewska, K., Samborowska, E.and Ufnal, M. (2020) Heart Failure Disturbs Gut–Blood Barrier and Increases Plasma Trimethylamine, a Toxic Bacterial Metabolite. IJMS 21, 6161. doi:10.3390/ijms21176161

Niemiro, A., Cysewski, D., Brzywczy, J., Wawrzyńska, A., Sieńko, M., Poznański, J.and Sirko, A. (2020) Similar but Not Identical—Binding Properties of LSU (Response to Low Sulfur) Proteins From Arabidopsis thaliana. Front. Plant Sci. 11, doi:10.3389/fpls.2020.01246

Bucholc, K., Skrajna, A., Adamska, K., Yang, X.-C., Krajewski, K., Poznański, J., Dadlez, M., Domiński, Z.and Zhukov, I. (2020) Structural Analysis of the SANT/Myb Domain of FLASH and YARP Proteins and Their Complex with the C-Terminal Fragment of NPAT by NMR Spectroscopy and Computer Simulations. IJMS 21, 5268. doi:10.3390/ijms21155268

Skorupska, A., Bystranowska, D., Dąbrowska, K.and Ożyhar, A. (2020) Calcium ions modulate the structure of the intrinsically disordered Nucleobindin-2 protein. International Journal of Biological Macromolecules 154, 1091–1104. doi:10.1016/j.ijbiomac.2020.03.110

Puchała, W., Burdukiewicz, M., Kistowski, M., Dąbrowska, K. A., Badaczewska-Dawid, A. E., Cysewski, D.and Dadlez, M. (2020) HaDeX: an R package and web-server for analysis of data from hydrogen–deuterium exchange mass spectrometry experiments. Bioinformatics, doi:10.1093/bioinformatics/btaa587

Kuzniewska, B., Cysewski, D., Wasilewski, M., Sakowska, P., Milek, J., Kulinski, T. M., Winiarski, M., Kozielewicz, P., Knapska, E., Dadlez, M., Chacinska, A., Dziembowski, A.and Dziembowska, M. (2020) Mitochondrial protein biogenesis in the synapse is supported by local translation. EMBO Rep, doi:10.15252/embr.201948882

Panda, P., Kovacs, L., Dzhindzhev, N., Fatalska, A., Persico, V., Geymonat, M., Riparbelli, M. G., Callaini, G.and Glover, D. M. (2020) Tissue specific requirement of Drosophila Rcd4 for centriole duplication and ciliogenesis. Journal of Cell Biology 219, doi:10.1083/jcb.201912154

Gawrys-Kopczynska, M., Konop, M., Maksymiuk, K., Kraszewska, K., Derzsi, L., Sozanski, K., Holyst, R., Pilz, M., Samborowska, E., Dobrowolski, L., Jaworska, K., Mogilnicka, I.and Ufnal, M. (2020) TMAO, a seafood-derived molecule, produces diuresis and reduces mortality in heart failure rats. eLife 9, doi:10.7554/elife.57028

Zegarska, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Jazwiec, R., Dadlez, M.and Paczek, L. (2020) Higher Concentrations of Cyclosporine Metabolites in Liver Transplant Recipients With a History of Viral and Bacterial Infections. Transplantation Proceedings, doi:10.1016/j.transproceed.2020.03.039

Kopacz, A., Kloska, D., Targosz-Korecka, M., Zapotoczny, B., Cysewski, D., Personnic, N., Werner, E., Hajduk, K., Jozkowicz, A.and Grochot-Przeczek, A. (2020) Keap1 governs ageing-induced protein aggregation in endothelial cells. Redox Biology, 101572. doi:10.1016/j.redox.2020.101572

Bałaban, J., Wierzbicki, M., Zielińska, M., Szczepaniak, J., Sosnowska, M., Daniluk, K., Cysewski, D., Koczoń, P., Chwalibog, A.and Sawosz, E. (2020) Effects of Graphene Oxide Nanofilm and Chicken Embryo Muscle Extract on Muscle Progenitor Cell Differentiation and Contraction. Molecules 25, 1991. doi:10.3390/molecules25081991

Kaus‐Drobek, M., Mücke, N., Szczepanowski, R. H., Wedig, T., Czarnocki‐Cieciura, M., Polakowska, M., Herrmann, H., Wysłouch‐Cieszyńska, A.and Dadlez, M. (2020) Vimentin S‐glutathionylation at Cys328 inhibits filament elongation and induces severing of mature filaments in vitro. FEBS J, doi:10.1111/febs.15321

Tarnowski, L., Collados Rodriguez, M., Brzywczy, J., Cysewski, D., Wawrzynska, A.and Sirko, A. (2020) Overexpression of the Selective Autophagy Cargo Receptor NBR1 Modifies Plant Response to Sulfur Deficit. Cells 9, 669. doi:10.3390/cells9030669

Onyszkiewicz, M., Gawrys-Kopczynska, M., Sałagaj, M., Aleksandrowicz, M., Sawicka, A., Koźniewska, E., Samborowska, E.and Ufnal, M. (2020) Valeric acid lowers arterial blood pressure in rats. European Journal of Pharmacology, 173086. doi:10.1016/j.ejphar.2020.173086

Pierzynowska, K., Woliński, J., Weström, B., Jazwiec, R., Shmigel, H.and Pierzynowski, S. G. (2020) Absorption of Polyunsaturated Fatty Acid (PUFA) Is Related to IgG Blood Levels of Neonatal Pigs during the First 48 Hours Postpartum. Journal of Immunology Research 2020, 1–8. doi:10.1155/2020/3813250

Skrzypecki, J., Niewęgłowska, K.and Samborowska, E. (2020) Valeric Acid, a Gut Microbiota Product, Penetrates to the Eye and Lowers Intraocular Pressure in Rats. Nutrients 12, 387. doi:10.3390/nu12020387

Kopacz, A., Klóska, D., Proniewski, B., Cysewski, D., Personnic, N., Piechota-Polańczyk, A., Kaczara, P., Zakrzewska, A., Forman, H. J., Dulak, J., Józkowicz, A.and Grochot-Przęczek, A. (2020) Keap1 controls protein S-nitrosation and apoptosis-senescence switch in endothelial cells. Redox Biology 28, 101304. doi:10.1016/j.redox.2019.101304

Kluska, K., Peris-Díaz, M. D., Płonka, D., Moysa, A., Dadlez, M., Deniaud, A., Bal, W.and Krężel, A. (2020) Formation of highly stable multinuclear AgnSn clusters in zinc fingers disrupts their structure and function. Chem. Commun. 56, 1329–1332. doi:10.1039/c9cc09418k

Bucholc, K., Aik, W. S., Yang, X.-. cui ., Wang, K., Zhou, Z. H., Dadlez, M., Marzluff, W. F., Tong, L.and Dominski, Z. (2019) Composition and processing activity of a semi-recombinant holo U7 snRNP. Nucleic Acids Research 48, 1508–1530. doi:10.1093/nar/gkz1148

Moysa, A., Hammerschmid, D., Szczepanowski, R. H., Sobott, F.and Dadlez, M. (2019) Enhanced oligomerization of full-length RAGE by synergy of the interaction of its domains. Sci Rep 9, doi:10.1038/s41598-019-56993-9

Onyszkiewicz, M., Gawrys-Kopczynska, M., Konopelski, P., Aleksandrowicz, M., Sawicka, A., Koźniewska, E., Samborowska, E.and Ufnal, M. (2019) Butyric acid, a gut bacteria metabolite, lowers arterial blood pressure via colon-vagus nerve signaling and GPR41/43 receptors. Pflugers Arch - Eur J Physiol, doi:10.1007/s00424-019-02322-y

Tarnowski, K., Klimecka, M., Ciesielski, A., Goch, G., Kulik, A., Fedak, H., Poznański, J., Lichocka, M., Pierechod, M., Engh, R. A., Dadlez, M., Dobrowolska, G.and Bucholc, M. (2019) Two SnRK2-Interacting Calcium Sensor Isoforms Negatively Regulate SnRK2 Activity by Different Mechanisms. Plant Physiol. 182, 1142–1160. doi:10.1104/pp.19.00900

Kolba, M. D., Dudka, W., Zaręba-Kozioł, M., Kominek, A., Ronchi, P., Turos, L., Chroscicki, P., Wlodarczyk, J., Schwab, Y., Klejman, A., Cysewski, D., Srpan, K., Davis, D. M.and Piwocka, K. (2019) Tunneling nanotube-mediated intercellular vesicle and protein transfer in the stroma-provided imatinib resistance in chronic myeloid leukemia cells. Cell Death Dis 10, doi:10.1038/s41419-019-2045-8

Grzesiuk, M., Bednarska, A., Mielecki, D., Garbicz, D., Marcinkowski, M., Pilžys, T., Malinowska, A., Świderska, B.and Grzesiuk, E. (2019) Anticancer agents found in environment affect Daphnia at population, individual and molecular levels. Aquatic Toxicology 215, 105288. doi:10.1016/j.aquatox.2019.105288

Bryk, A. H., Cysewski, D., Dadlez, M.and Undas, A. (2019) Identification of glycated and acetylated lysine residues in human α2-antiplasmin. Biochemical and Biophysical Research Communications, doi:10.1016/j.bbrc.2019.09.144

Sulkowska, A., Auber, A., Sikorski, P. J., Silhavy, D., Auth, M., Sitkiewicz, E., Jean, V., Merret, R., Bousquet-Antonelli, C.and Kufel, J. (2019) RNA Helicases from the DEA(D/H)-Box Family Contribute to Plant NMD Efficiency. Plant and Cell Physiology, doi:10.1093/pcp/pcz186

Hryniewiecka, E., Żegarska, J., Żochowska, D., Samborowska, E., Jaźwiec, R., Kosieradzki, M., Nazarewski, S., Dadlez, M.and Pączek, L. (2019) Dose-adjusted and dose/kg-adjusted concentrations of mycophenolic acid precursors reflect metabolic ratios of their metabolites in contrast with tacrolimus and cyclosporine. Biosci. Rep. 39, BSR20182031. doi:10.1042/bsr20182031

Kulma, M., Dadlez, M.and Kwiatkowska, K. (2019) Insight into the Structural Dynamics of the Lysenin During Prepore-to-Pore Transition Using Hydrogen–Deuterium Exchange Mass Spectrometry. Toxins 11, 462. doi:10.3390/toxins11080462

Przygońska, K., Pacewicz, M., Sadowska, W., Poznański, J., Bal, W.and Dadlez, M. (2019) His6, His13, and His14 residues in Aβ 1–40 peptide significantly and specifically affect oligomeric equilibria. Sci Rep 9, doi:10.1038/s41598-019-45988-1

Kotrys, A. V., Cysewski, D., Czarnomska, S. D., Pietras, Z., Borowski, L. S., Dziembowski, A.and Szczesny, R. J. (2019) Quantitative proteomics revealed C6orf203/MTRES1 as a factor preventing stress-induced transcription deficiency in human mitochondria. Nucleic Acids Research, doi:10.1093/nar/gkz542

Samulak, J. J., Sawicka, A. K., Samborowska, E.and Olek, R. A. (2019) Plasma Trimethylamine-N-oxide following Cessation of L-carnitine Supplementation in Healthy Aged Women. Nutrients 11, 1322. doi:10.3390/nu11061322

GODLEWSKA, R., KLIM, J., DĘBSKI, J., WYSZYŃSKA, A.and ŁASICA, A. (2019) Influence of Environmental and Genetic Factors on Proteomic Profiling of Outer Membrane Vesicles from Campylobacter jejuni. Pol J Microbiol 68, 255–261. doi:10.33073/pjm-2019-027

Lebecka, R., Kistowski, M., Dębski, J., Szajko, K., Murawska, Z.and Marczewski, W. (2019) Quantitative proteomic analysis of differentially expressed proteins in tubers of potato plants differing in resistance to Dickeya solani. Plant and Soil, doi:10.1007/s11104-019-04125-7

Skierka, K., Wilamowski, P., Wielechowska, M., Cysewski, D., Senkara, E., Wińska, P., Bretner, M.and Cieśla, J. (2019) Human dihydrofolate reductase is a substrate of protein kinase CK2α. Biochemical and Biophysical Research Communications 513, 368–373. doi:10.1016/j.bbrc.2019.03.186

Bondarchuk, T. V., Lozhko, D. M., Shalak, V. F., Fatalska, A., Szczepanowski, R. H., Dadlez, M., Negrutskii, B. S.and El'skaya, A. V. (2019) The protein-binding N-terminal domain of human translation elongation factor 1Bβ possesses a dynamic α-helical structural organization. International Journal of Biological Macromolecules 126, 899–907. doi:10.1016/j.ijbiomac.2018.12.220

Jasiecki, J., Limon-Sztencel, A., Żuk, M., Chmara, M., Cysewski, D., Limon, J.and Wasąg, B. (2019) Synergy between the alteration in the N-terminal region of butyrylcholinesterase K variant and apolipoprotein E4 in late-onset Alzheimer’s disease. Sci Rep 9, doi:10.1038/s41598-019-41578-3

Mohanraj, K., Wasilewski, M., Benincá, C., Cysewski, D., Poznanski, J., Sakowska, P., Bugajska, Z., Deckers, M., Dennerlein, S., Fernandez‐Vizarra, E., Rehling, P., Dadlez, M., Zeviani, M.and Chacinska, A. (2019) Inhibition of proteasome rescues a pathogenic variant of respiratory chain assembly factor COA7. EMBO Mol Med. 11, e9561. doi:10.15252/emmm.201809561

Stadnicka, K., Dębowska, M., Dębski, J.and Bajek, A. (2019) Secreting oviduct epithelial cells of Coturnix coturnix japonica (QOEC) and changes to their proteome after nonviral transfection. J Cell Biochem 120, 12724–12739. doi:10.1002/jcb.28541

Borkiewicz, L., Polkowska-Kowalczyk, L., Cieśla, J., Sowiński, P., Jończyk, M., Rymaszewski, W., Szymańska, K. P., Jaźwiec, R., Muszyńska, G.and Szczegielniak, J. (2019) Expression of maize calcium-dependent protein kinase (ZmCPK11) improves salt tolerance in transgenic Arabidopsis plants by regulating sodium and potassium homeostasis and stabilizing photosystem II. Physiol Plantarum, doi:10.1111/ppl.12938

Nowakowski, M., Czapla-Masztafiak, J., Zhukov, I., Zhukova, L., Kozak, M.and Kwiatek, W. M. (2019) Electronic properties of a PrPC–Cu(ii) complex as a marker of 5-fold Cu(ii) coordination. Metallomics 11, 632–642. doi:10.1039/c8mt00339d

Głowacka-Rutkowska, A., Gozdek, A., Empel, J., Gawor, J., Żuchniewicz, K., Kozińska, A., Dębski, J., Gromadka, R.and Łobocka, M. (2019) The Ability of Lytic Staphylococcal Podovirus vB_SauP_phiAGO1.3 to Coexist in Equilibrium With Its Host Facilitates the Selection of Host Mutants of Attenuated Virulence but Does Not Preclude the Phage Antistaphylococcal Activity in a Nematode Infection Model. Front. Microbiol. 9, doi:10.3389/fmicb.2018.03227

Kuncewicz, K., Spodzieja, M., Sieradzan, A., Karczyńska, A., Dąbrowska, K., Dadlez, M., Speiser, D. E., Derre, L.and Rodziewicz-Motowidło, S. (2019) A structural model of the immune checkpoint CD160–HVEM complex derived from HDX-mass spectrometry and molecular modeling. Oncotarget 10, doi:10.18632/oncotarget.26570

Kulma, M., Kacprzyk-Stokowiec, A., Traczyk, G., Kwiatkowska, K.and Dadlez, M. (2019) Fine-tuning of the stability of β-strands by Y181 in perfringolysin O directs the prepore to pore transition. Biochimica et Biophysica Acta (BBA) - Biomembranes 1861, 110–122. doi:10.1016/j.bbamem.2018.08.008

Paziewska, A., Polkowski, M., Rubel, T., Karczmarski, J., Wiechowska-Kozlowska, A., Dabrowska, M., Mikula, M., Dadlez, M.and Ostrowski, J. (2018) Mass Spectrometry-Based Comprehensive Analysis of Pancreatic Cyst Fluids. BioMed Research International 2018, 1–12. doi:10.1155/2018/7169595

Hryniewiecka, E., Żegarska, J., Żochowska, D., Samborowska, E., Jaźwiec, R., Kosieradzki, M., Nazarewski, S., Dadlez, M.and Pączek, L. (2018) Cyclosporine Metabolites’ Metabolic Ratios May Be Markers of Cardiovascular Disease in Kidney Transplant Recipients Treated with Cyclosporine A-Based Immunosuppression Regimens. Cardiovasc Toxicol, doi:10.1007/s12012-018-9492-9

Jaworska, K., Huc, T., Gawrys, M., Onyszkiewicz, M., Samborowska, E.and Ufnal, M. (2018) An In Vivo Method for Evaluating the Gut-Blood Barrier and Liver Metabolism of Microbiota Products. JoVE, doi:10.3791/58456

Maszkowska, J., Dębski, J., Kulik, A., Kistowski, M., Bucholc, M., Lichocka, M., Klimecka, M., Sztatelman, O., Szymańska, K. P., Dadlez, M.and Dobrowolska, G. (2018) Phosphoproteomic Analysis Reveals that Dehydrins ERD10 and ERD14 are Phosphorylated by SNF1-related Protein Kinase 2.10 in Response to Osmotic Stress. Plant Cell Environ, doi:10.1111/pce.13465

Huc, T., Drapala, A., Gawrys, M., Konop, M., Bielinska, K., Zaorska, E., Samborowska, E., Wyczalkowska-Tomasik, A., Pączek, L., Dadlez, M.and Ufnal, M. (2018) CHRONIC, LOW-DOSE TMAO TREATMENT REDUCES DIASTOLIC DYSFUNCTION AND HEART FIBROSIS IN HYPERTENSIVE RATS.. American Journal of Physiology-Heart and Circulatory Physiology, doi:10.1152/ajpheart.00536.2018

Pietras, Z., Wojcik, M. A., Borowski, L. S., Szewczyk, M., Kulinski, T. M., Cysewski, D., Stepien, P. P., Dziembowski, A.and Szczesny, R. J. (2018) Controlling the mitochondrial antisense – role of the SUV3-PNPase complex and its co-factor GRSF1 in mitochondrial RNA surveillance. Molecular & Cellular Oncology 5, e1516452. doi:10.1080/23723556.2018.1516452

Klóska, D., Kopacz, A., Cysewski, D., Aepfelbacher, M., Dulak, J., Jozkowicz, A.and Grochot-Przeczek, A. (2018) Nrf2 sequesters Keap1 preventing podosome disassembly: a quintessential duet moonlights in endothelium. Antioxidants & Redox Signaling, doi:10.1089/ars.2018.7505

Czarnecka, A., Aleksandrowicz, M., Jasiński, K., Jaźwiec, R., Kalita, K., Hilgier, W.and Zielińska, M. (2018) Cerebrovascular reactivity and cerebral perfusion of rats with acute liver failure: role of L-glutamine and asymmetric dimethylarginine in L-arginine-induced response. J. Neurochem., doi:10.1111/jnc.14578

Przygońska, K., Poznański, J., Mistarz, U. H., Rand, K. D.and Dadlez, M. (2018) Side-chain moieties from the N-terminal region of Aβ are Involved in an oligomer-stabilizing network of interactions. PLoS ONE 13, e0201761. doi:10.1371/journal.pone.0201761

Grzeszczuk, M. J., Bocian-Ostrzycka, K. M., Banaś, A. M., Roszczenko-Jasinska, P., Malinowska, A., Stralova, H., Haas, R., Meyer, T. F.and Jagusztyn-Krynicka, E. K. (2018) Thioloxidoreductase HP0231 of Helicobacter pylori impacts HopQ-dependent CagA translocation. International Journal of Medical Microbiology, doi:10.1016/j.ijmm.2018.08.002

Garbicz, D., Mielecki, D., Wrzesinski, M., Pilzys, T., Marcinkowski, M., Piwowarski, J., Debski, J., Palak, E., Szczecinski, P., Krawczyk, H.and Grzesiuk, E. (2018) Evaluation of Anti-cancer Activity of Stilbene and Methoxydibenzo[b,f] oxepin Derivatives. CCDT 18, 706–717. doi:10.2174/1568009617666170623120742

Chlebowska-Tuz, J., Sokolowska, O., Gaj, P., Lazniewski, M., Firczuk, M., Borowiec, K., Sas-Nowosielska, H., Bajor, M., Malinowska, A., Muchowicz, A., Ramji, K., Stawinski, P., Sobczak, M., Pilch, Z., Rodziewicz-Lurzynska, A., Zajac, M., Giannopoulos, K., Juszczynski, P., Basak, G. W., Plewczynski, D., Ploski, R., Golab, J.and Nowis, D. (2018) Inhibition of protein disulfide isomerase induces differentiation of acute myeloid leukemia cells. Haematologica 103, 1843–1852. doi:10.3324/haematol.2018.190231

Pietras, Z., Wojcik, M. A., Borowski, L. S., Szewczyk, M., Kulinski, T. M., Cysewski, D., Stepien, P. P., Dziembowski, A.and Szczesny, R. J. (2018) Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria. Nat Commun 9, doi:10.1038/s41467-018-05007-9

Hryniewiecka, E., Zegarska, J., Zochowska, D., Samborowska, E., Jazwiec, R., Kosieradzki, M., Nazarewski, S., Dadlez, M.and Paczek, L. (2018) Cardiovascular Disease in Kidney Transplantation and Its Association With Blood Concentrations of Cyclosporine and Cyclosporine Metabolites. Transplantation Proceedings 50, 1850–1854. doi:10.1016/j.transproceed.2018.03.115

Heidorn-Czarna, M., Domanski, D., Kwasniak-Owczarek, M.and Janska, H. (2018) Targeted Proteomics Approach Toward Understanding the Role of the Mitochondrial Protease FTSH4 in the Biogenesis of OXPHOS During Arabidopsis Seed Germination. Front. Plant Sci. 9, doi:10.3389/fpls.2018.00821

Wycisk, K., Tarczewska, A., Kaus-Drobek, M., Dadlez, M., Hołubowicz, R., Pietras, Z., Dziembowski, A., Taube, M., Kozak, M., Orłowski, M.and Ożyhar, A. (2018) Intrinsically disordered N-terminal domain of the Helicoverpa armigera Ultraspiracle stabilizes the dimeric form via a scorpion-like structure. The Journal of Steroid Biochemistry and Molecular Biology, doi:10.1016/j.jsbmb.2018.06.011

Hareza, A., Bakun, M., Świderska, B., Dudkiewicz, M., Koscielny, A., Bajur, A., Jaworski, J., Dadlez, M.and Pawłowski, K. (2018) Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58. PeerJ 6, e4599. doi:10.7717/peerj.4599

Kopacz, A., Kloska, D., Cysewski, D., Dulak, J., Jozkowicz, A.and Grochot-Przeczek, A. (2018) P357Nrf2 sequesters Keap1 preventing endothelial dysfunction. Cardiovascular Research 114, S92–S92. doi:10.1093/cvr/cvy060.269

Lisowska-Myjak, B., Skarżyńska, E.and Bakun, M. (2018) Meconium proteins as a source of biomarkers for the assessment of the intrauterine environment of the fetus. J Dev Orig Health Dis, 1–9. doi:10.1017/s2040174418000028

Zegarska, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Jazwiec, R., Maciej, K., Nazarewski, S., Dadlez, M.and Paczek, L. (2018) Evaluation of the relationship between concentrations of tacrolimus metabolites, 13-O-demethyl tacrolimus and 15-O-demethyl tacrolimus, and clinical and biochemical parameters in kidney transplant recipients. Transplantation Proceedings, doi:10.1016/j.transproceed.2018.03.025

Kociszewska-Najman, B., Mazanowska, N., Pietrzak, B., Paczek, L., Szpotanska-Sikorska, M., Schreiber-Zamora, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Dadlez, M.and Wielgos, M. (2018) Low Transfer of Tacrolimus and Its Metabolites into Colostrum of Graft Recipient Mothers. Nutrients 10, 267. doi:10.3390/nu10030267

Skrajna, A., Yang, X.-. cui ., Dadlez, M., Marzluff, W. F.and Dominski, Z. (2018) Protein composition of catalytically active U7-dependent processing complexes assembled on histone pre-mRNA containing biotin and a photo-cleavable linker. Nucleic Acids Research 46, 4752–4770. doi:10.1093/nar/gky133

Konop, M., Radkowski, M., Grochowska, M., Perlejewski, K., Samborowska, E.and Ufnal, M. (2018) Enalapril decreases rat plasma concentration of TMAO, a gut bacteria-derived cardiovascular marker. Biomarkers, 1–6. doi:10.1080/1354750x.2018.1432689

Perzanowska, A., Fatalska, A., Wojtas, G., Lewandowicz, A., Michalak, A., Krasowski, G., Borchers, C. H., Dadlez, M.and Domanski, D. (2018) An MRM-Based Cytokeratin Marker Assay as a Tool for Cancer Studies: Application to Lung Cancer Pleural Effusions. Prot. Clin. Appl. 12, 1700084. doi:10.1002/prca.201700084

Drabikowski, K., Ferralli, J., Kistowski, M., Oledzki, J., Dadlez, M.and Chiquet-Ehrismann, R. (2018) Comprehensive list of SUMO targets in Caenorhabditis elegans and its implication for evolutionary conservation of SUMO signaling. Sci Rep 8, doi:10.1038/s41598-018-19424-9

Przanowski, P., Loska, S., Cysewski, D., Dabrowski, M.and Kaminska, B. (2018) ISG'ylation increases stability of numerous proteins including Stat1, which prevents premature termination of immune response in LPS-stimulated microglia. Neurochemistry International 112, 227–233. doi:10.1016/j.neuint.2017.07.013

Kazazić, S., Karačić, Z., Sabljić, I., Agić, D., Tomin, M., Abramić, M., Dadlez, M., Tomić, A.and Tomić, S. (2018) Conservation of the conformational dynamics and ligand binding within M49 enzyme family. RSC Adv. 8, 13310–13322. doi:10.1039/c7ra13059g

Kociszewska-Najman, B., Szpotańska-Sikorska, M., Mazanowska, N., Pączek, L., Samborowska, E., Dadlez, M., Wielgoś, M.and Pietrzak, B. (2017) Transfer of Everolimus into Colostrum of a Kidney Transplant Mother. Ann Transplant 22, 755–758. doi:10.12659/aot.907944

Jaworska, K., Huc, T., Samborowska, E., Dobrowolski, L., Bielinska, K., Gawlak, M.and Ufnal, M. (2017) Hypertension in rats is associated with an increased permeability of the colon to TMA, a gut bacteria metabolite. PLoS ONE 12, e0189310. doi:10.1371/journal.pone.0189310

Dzhindzhev, N. S., Tzolovsky, G., Lipinszki, Z., Abdelaziz, M., Debski, J., Dadlez, M.and Glover, D. M. (2017) Two-step phosphorylation of Ana2 by Plk4 is required for the sequential loading of Ana2 and Sas6 to initiate procentriole formation. Open Biol. 7, 170247. doi:10.1098/rsob.170247

Bielecka, Z. F., Malinowska, A., Brodaczewska, K. K., Klemba, A., Kieda, C., Krasowski, P., Grzesiuk, E., Piwowarski, J., Czarnecka, A. M.and Szczylik, C. (2017) Hypoxic 3D in vitro culture models reveal distinct resistance processes to TKIs in renal cancer cells. Cell Biosci 7, doi:10.1186/s13578-017-0197-8

Librizzi, M., Caradonna, F., Cruciata, I., Dębski, J., Sansook, S., Dadlez, M., Spencer, J.and Luparello, C. (2017) Molecular Signatures Associated with Treatment of Triple-Negative MDA-MB231 Breast Cancer Cells with Histone Deacetylase Inhibitors JAHA and SAHA. Chem. Res. Toxicol. 30, 2187–2196. doi:10.1021/acs.chemrestox.7b00269

Milewski, K., Bogacińska-Karaś, M., Fręśko, I., Hilgier, W., Jaźwiec, R., Albrecht, J.and Zielińska, M. (2017) Ammonia Reduces Intracellular Asymmetric Dimethylarginine in Cultured Astrocytes Stimulating Its y+LAT2 Carrier-Mediated Loss. IJMS 18, 2308. doi:10.3390/ijms18112308

Nowakowski, M., Czapla-Masztafiak, J., Kozak, M., Zhukov, I., Zhukova, L., Szlachetko, J.and Kwiatek, W. M. (2017) Preliminary results of human PrP C protein studied by spectroscopic techniques. Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms 411, 121–128. doi:10.1016/j.nimb.2017.06.022

Cieplak-Rotowska, M. K., Tarnowski, K., Rubin, M., Fabian, M. R., Sonenberg, N., Dadlez, M.and Niedzwiecka, A. (2017) Structural Dynamics of the GW182 Silencing Domain Including its RNA Recognition motif (RRM) Revealed by Hydrogen-Deuterium Exchange Mass Spectrometry. J. Am. Soc. Mass Spectrom. 29, 158–173. doi:10.1007/s13361-017-1830-9

Schmitzberger, F., Richter, M. M., Gordiyenko, Y., Robinson, C. V., Dadlez, M.and Westermann, S. (2017) Molecular basis for inner kinetochore configuration through RWD domain–peptide interactions. EMBO J., e201796636. doi:10.15252/embj.201796636

Mroczek, S., Chlebowska, J., Kuliński, T. M., Gewartowska, O., Gruchota, J., Cysewski, D., Liudkovska, V., Borsuk, E., Nowis, D.and Dziembowski, A. (2017) The non-canonical poly(A) polymerase FAM46C acts as an onco-suppressor in multiple myeloma. Nat Commun 8, doi:10.1038/s41467-017-00578-5

Olkowicz, M., Debski, J., Jablonska, P., Dadlez, M.and Smolenski, R. T. (2017) Application of a new procedure for liquid chromatography/mass spectrometry profiling of plasma amino acid-related metabolites and untargeted shotgun proteomics to identify mechanisms and biomarkers of calcific aortic stenosis. Journal of Chromatography A 1517, 66–78. doi:10.1016/j.chroma.2017.08.024

Bobrowicz, M., Dwojak, M., Pyrzynska, B., Stachura, J., Muchowicz, A., Berthel, E., Dalla Venezia, N., Kozikowski, M., Siernicka, M., Miazek, N., Zapala, P., Domagala, A., Bojarczuk, K., Malenda, A., Barankiewicz, J., Graczyk-Jarzynka, A., Zagozdzon, A., Gabrysiak, M., Diaz, J.-J., Karp, M., Lech-Maranda, E., Firczuk, M., Giannopoulos, K., Efremov, D. G., Laurenti, L., Baatout, D., Frenzel, L., Malinowska, A., Slabicki, M., Zenz, T., Zerrouqi, A., Golab, J.and Winiarska, M. (2017) HDAC6 inhibition up-regulates CD20 levels and increases the efficacy of anti-CD20 monoclonal antibodies. Blood, doi:10.1182/blood-2016-08-736066

Gozdz, A., Nikolaienko, O., Urbanska, M., Cymerman, I. A., Sitkiewicz, E., Blazejczyk, M., Dadlez, M., Bramham, C. R.and Jaworski, J. (2017) GSK3α and GSK3β Phosphorylate Arc and Regulate its Degradation. Front. Mol. Neurosci. 10, doi:10.3389/fnmol.2017.00192

Skrajna, A., Yang, X.-. cui ., Bucholc, K., Zhang, J., Hall, T. M. T., Dadlez, M., Marzluff, W. F.and Dominski, Z. (2017) U7 snRNP is recruited to histone pre-mRNA in a FLASH-dependent manner by two separate regions of the stem–loop binding protein. RNA 23, 938–951. doi:10.1261/rna.060806.117

Kulma, M., Kacprzyk-Stokowiec, A., Kwiatkowska, K., Traczyk, G., Sobota, A.and Dadlez, M. (2017) R468A mutation in perfringolysin O destabilizes toxin structure and induces membrane fusion. Biochimica et Biophysica Acta (BBA) - Biomembranes, doi:10.1016/j.bbamem.2017.03.001

Krol, K., Jendrysek, J., Debski, J., Skoneczny, M., Kurlandzka, A., Kaminska, J., Dadlez, M.and Skoneczna, A. (2017) Ribosomal DNA status inferred from DNA cloud assays and mass spectrometry identification of agarose-squeezed proteins interacting with chromatin (ASPIC-MS). Oncotarget, doi:10.18632/oncotarget.15332

Premchandar, A., Kupniewska, A., Bonna, A., Faure, G., Fraczyk, T., Roldan, A., Hoffmann, B., Faria da Cunha, M., Herrmann, H., Lukacs, G. L., Edelman, A.and Dadlez, M. (2017) New insights into interactions between the nucleotide-binding domain of CFTR and keratin 8. Protein Science 26, 343–354. doi:10.1002/pro.3086

Jakubowski, M., Dębski, J., Szahidewicz-Krupska, E., Turek-Jakubowska, A., Gawryś, J., Gawryś, K., Skomro, R., Derkacz, A.and Doroszko, A. (2017) Platelet Carbonic Anhydrase II, a Forgotten Enzyme, May Be Responsible for Aspirin Resistance. Oxidative Medicine and Cellular Longevity 2017, 1–8. doi:10.1155/2017/3132063

Ambroziak, U., Kuryłowicz, A., Kępczyńska-Nyk, A., Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Samborowska, E., Dadlez, M., Wysłouch-Cieszyńska, A.and Bednarczuk, T. (2017) Total testosterone to dihydrotestosterone ratio assessed by LC-MS/MS predicts a worse metabolic profile not only in PCOS patients.. Ginekologia polska 88, 5–8. doi:10.5603/GP.a2017.0001

Stasiak, M., Sitkiewicz, E., Gawrys, K., Szemraj, J., Popielarski, M., Swiatkowska, M., Bednarek, R.and Studzian, M. (2017) Differential Quantitative Proteomics of Human Microvascular Endothelial Cells 1 by iTRAQ Reveals Palladin to be a New Biomarker During TGF-β1 Induced Endothelial Mesenchymal Transition. J Proteomics Bioinform 10, doi:10.4172/jpb.1000447

Kistowski, M., Dębski, J., Karczmarski, J., Paziewska, A., Olędzki, J., Mikula, M., Ostrowski, J.and Dadlez, M. (2016) A Strong Neutrophil Elastase Proteolytic Fingerprint Marks the Carcinoma Tumor Proteome. Molecular & Cellular Proteomics 16, 213–227. doi:10.1074/mcp.m116.058818

Podszywalow-Bartnicka, P., Cmoch, A., Wolczyk, M., Bugajski, L., Tkaczyk, M., Dadlez, M., Nieborowska-Skorska, M., Koromilas, A. E., Skorski, T.and Piwocka, K. (2016) Increased phosphorylation of eIF2α in chronic myeloid leukemia cells stimulates secretion of matrix modifying enzymes. Oncotarget, doi:10.18632/oncotarget.12941

Domanski, D., Zegrocka-Stendel, O., Perzanowska, A., Dutkiewicz, M., Kowalewska, M., Grabowska, I., Maciejko, D., Fogtman, A., Dadlez, M.and Koziak, K. (2016) Molecular Mechanism for Cellular Response to β-Escin and Its Therapeutic Implications. PLOS ONE 11, e0164365. doi:10.1371/journal.pone.0164365

Premchandar, A., Mücke, N., Poznański, J., Wedig, T., Kaus-Drobek, M., Herrmann, H.and Dadlez, M. (2016) Structural Dynamics of the Vimentin Coiled-Coil Contact Regions involved in Filament Assembly as revealed by Hydrogen-Deuterium Exchange. Journal of Biological Chemistry, jbc.M116.748145. doi:10.1074/jbc.m116.748145

Kalisiak, K., Kuliński, T. M., Tomecki, R., Cysewski, D., Pietras, Z., Chlebowski, A., Kowalska, K.and Dziembowski, A. (2016) A short splicing isoform of HBS1L links the cytoplasmic exosome and SKI complexes in humans. Nucleic Acids Res, gkw862. doi:10.1093/nar/gkw862

Czarnecka, A., Milewski, K., Jaźwiec, R.and Zielińska, M. (2016) Intracerebral Administration of S-Adenosylhomocysteine or S-Adenosylmethionine Attenuates the Increases in the Cortical Extracellular Levels of Dimethylarginines Without Affecting cGMP Level in Rats with Acute Liver Failure. Neurotoxicity Research 31, 99–108. doi:10.1007/s12640-016-9668-7

Per a-Kajan, J., Utyro, O., Rusek, M., Malinowska, A., Sitkiewicz, E.and Jakubowski, H. (2016) N-Homocysteinylation impairs collagen cross-linking in cystathionine  -synthase-deficient mice: a novel mechanism of connective tissue abnormalities. The FASEB Journal 30, 3810–3821. doi:10.1096/fj.201600539

Buszewicz, D., Archacki, R., Palusiński, A., Kotliński, M., Fogtman, A., Iwanicka-Nowicka, R., Sosnowska, K., Kuciński, J., Pupel, P., Olędzki, J., Dadlez, M., Misicka, A., Jerzmanowski, A.and Koblowska, M. K. (2016) HD2C histone deacetylase and a SWI/SNF chromatin remodelling complex interact and both are involved in mediating the heat stress response in Arabidopsis . Plant, Cell & Environment 39, 2108–2122. doi:10.1111/pce.12756

Domanski, D., Perzanowska, A., Kistowski, M., Wojtas, G., Michalak, A., Krasowski, G.and Dadlez, M. (2016) A Multiplexed Cytokeratin Analysis Using Targeted Mass Spectrometry Reveals Specific Profiles in Cancer-Related Pleural Effusions. Neoplasia 18, 399–412. doi:10.1016/j.neo.2016.06.002

Faure, G., Bakouh, N., Lourdel, S., Odolczyk, N., Premchandar, A., Servel, N., Hatton, A., Ostrowski, M. K., Xu, H., Saul, F. A., Moquereau, C., Bitam, S., Pranke, I., Planelles, G., Teulon, J., Herrmann, H., Roldan, A., Zielenkiewicz, P., Dadlez, M., Lukacs, G. L., Sermet-Gaudelus, I., Ollero, M., Corringer, P.-J.and Edelman, A. (2016) Rattlesnake Phospholipase A2 Increases CFTR-Chloride Channel Current and Corrects ∆F508CFTR Dysfunction: Impact in Cystic Fibrosis. Journal of Molecular Biology 428, 2898–2915. doi:10.1016/j.jmb.2016.05.016

Krzywińska, E., Bucholc, M., Kulik, A., Ciesielski, A., Lichocka, M., Dębski, J., Ludwików, A., Dadlez, M., Rodriguez, P. L.and Dobrowolska, G. (2016) Phosphatase ABI1 and okadaic acid-sensitive phosphoprotein phosphatases inhibit salt stress-activated SnRK2.4 kinase. BMC Plant Biol 16, doi:10.1186/s12870-016-0817-1

Zegarska, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Jazwiec, R., Borowiec, A., Tszyrsznic, W., Chmura, A., Nazarewski, S., Dadlez, M.and Paczek, L. (2016) Tacrolimus Metabolite M-III May Have Nephrotoxic and Myelotoxic Effects and Increase the Incidence of Infections in Kidney Transplant Recipients. Transplantation Proceedings 48, 1539–1542. doi:10.1016/j.transproceed.2015.12.133

Hryniewiecka, E., Żegarska, J., Żochowska, D., Jaźwiec, R., Borowiec, A., Samborowska, E., Tszyrsznic, W., Dadlez, M.and Pączek, L. (2016) Hydroxylated, Hydroxymethylated, Dihydroxylated, and Trihydroxylated Cyclosporine Metabolites Can Be Nephrotoxic in Kidney Transplant Recipients. Transplantation Proceedings 48, 1551–1555. doi:10.1016/j.transproceed.2016.01.090

Zochowska, D., Zegarska, J., Hryniewiecka, E., Samborowska, E., Jazwiec, R., Tszyrsznic, W., Borowiec, A., Dadlez, M.and Paczek, L. (2016) Determination of Concentrations of Azathioprine Metabolites 6-Thioguanine and 6-Methylmercaptopurine in Whole Blood With the Use of Liquid Chromatography Combined With Mass Spectrometry. Transplantation Proceedings 48, 1836–1839. doi:10.1016/j.transproceed.2016.01.084

Slomnicki, L. P., Malinowska, A., Kistowski, M., Palusinski, A., Zheng, J.-J., Sepp, M., Timmusk, T., Dadlez, M.and Hetman, M. (2016) Nucleolar Enrichment of Brain Proteins with Critical Roles in Human Neurodevelopment. Mol Cell Proteomics 15, 2055–2075. doi:10.1074/mcp.m115.051920

McKenzie, C., Bassi, Z. I., Debski, J., Gottardo, M., Callaini, G., Dadlez, M.and D'Avino, P. P. (2016) Cross-regulation between Aurora B and Citron kinase controls midbody architecture in cytokinesis. Open Biol. 6, 160019. doi:10.1098/rsob.160019

Skrajna, A., Yang, X.-. cui ., Tarnowski, K., Fituch, K., Marzluff, W. F., Dominski, Z.and Dadlez, M. (2016) Mapping the Interaction Network of Key Proteins Involved in Histone mRNA Generation: A Hydrogen/Deuterium Exchange Study. Journal of Molecular Biology 428, 1180–1196. doi:10.1016/j.jmb.2016.01.031

Richter, M. M., Poznanski, J., Zdziarska, A., Czarnocki-Cieciura, M., Lipinszki, Z., Dadlez, M., Glover, D. M.and Przewloka, M. R. (2016) Network of protein interactions within the Drosophila inner kinetochore . Open Biol. 6, 150238. doi:10.1098/rsob.150238

Kotliński, M., Rutowicz, K., Kniżewski, Ł., Palusiński, A., Olędzki, J., Fogtman, A., Rubel, T., Koblowska, M., Dadlez, M., Ginalski, K.and Jerzmanowski, A. (2016) Histone H1 Variants in Arabidopsis Are Subject to Numerous Post-Translational Modifications, Both Conserved and Previously Unknown in Histones, Suggesting Complex Functions of H1 in Plants. PLOS ONE 11, e0147908. doi:10.1371/journal.pone.0147908

Trzeciecka, A., Klossowski, S., Bajor, M., Zagozdzon, R., Gaj, P., Muchowicz, A., Malinowska, A., Czerwoniec, A., Barankiewicz, J., Domagala, A., Chlebowska, J., Prochorec-Sobieszek, M., Winiarska, M., Ostaszewski, R., Gwizdalska, I., Golab, J., Nowis, D.and Firczuk, M. (2016) Dimeric peroxiredoxins are druggable targets in human Burkitt lymphoma. Oncotarget, doi:10.18632/oncotarget.6435

Drabikowski, K.and Dadlez, M. (2016) Dissecting SUMO Dynamics by Mass Spectrometry. Methods in Molecular Biology, 291–298. doi:10.1007/978-1-4939-3756-1_18

Nieckarz, M., Raczkowska, A., Dębski, J., Kistowski, M., Dadlez, M., Heesemann, J., Rossier, O.and Brzostek, K. (2015) Impact of OmpR on the membrane proteome of Yersinia enterocolitica in different environments: repression of major adhesin YadA and heme receptor HemR . Environ Microbiol, doi:10.1111/1462-2920.13165

Premchandar, A., Kupniewska, A., Tarnowski, K., Mücke, N., Mauermann, M., Kaus–Drobek, M., Edelman, A., Herrmann, H.and Dadlez, M. (2015) Analysis of distinct molecular assembly complexes of keratin K8 and K18 by hydrogen-deuterium exchange. Journal of Structural Biology, doi:10.1016/j.jsb.2015.10.001

Jastrzebska, Z., Kaminska, J., Chelstowska, A., Domanska, A., Rzepnikowska, W., Sitkiewicz, E., Cholbinski, P., Gourlay, C., Plochocka, D.and Zoladek, T. (2015) Mimicking the phosphorylation of Rsp5 in PKA site T761 affects its function and cellular localization. European Journal of Cell Biology, doi:10.1016/j.ejcb.2015.10.005

Kazazić, S., Bertoša, B., Luić, M., Mikleušević, G., Tarnowski, K., Dadlez, M., Narczyk, M.and Bzowska, A. (2015) New Insights into Active Site Conformation Dynamics of E. coli PNP Revealed by Combined H/D Exchange Approach and Molecular Dynamics Simulations. J. Am. Soc. Mass Spectrom., doi:10.1007/s13361-015-1239-2

Scifo, E., Szwajda, A., Soliymani, R., Pezzini, F., Bianchi, M., Dapkunas, A., Dębski, J., Uusi-Rauva, K., Dadlez, M., Gingras, A.-C., Tyynelä, J., Simonati, A., Jalanko, A., Baumann, M. H.and Lalowski, M. (2015) Quantitative analysis of PPT1 interactome in human neuroblastoma cells. Data in Brief 4, 207–216. doi:10.1016/j.dib.2015.05.016

Tarczewska, A., Kozłowska, M., Dobryszycki, P., Kaus-Drobek, M., Dadlez, M.and Ożyhar, A. (2015) Insight into the Unfolding Properties of Chd64, a Small, Single Domain Protein with a Globular Core and Disordered Tails. PLOS ONE 10, e0137074. doi:10.1371/journal.pone.0137074

Tomecki, R., Labno, A., Drazkowska, K., Cysewski, D.and Dziembowski, A. (2015) hUTP24 is essential for processing of the human rRNA precursor at site A1, but not at site A0. RNA Biology 12, 1010–1029. doi:10.1080/15476286.2015.1073437

Hennig, E. E., Piatkowska, M., Karczmarski, J., Goryca, K., Brewczynska, E., Jazwiec, R., Kluska, A., Omiotek, R., Paziewska, A., Dadlez, M.and Ostrowski, J. (2015) Limited predictive value of achieving beneficial plasma (Z)-endoxifen threshold level by CYP2D6 genotyping in tamoxifen-treated Polish women with breast cancer. BMC Cancer 15, doi:10.1186/s12885-015-1575-4

Scifo, E., Szwajda, A., Soliymani, R., Pezzini, F., Bianchi, M., Dapkunas, A., Dębski, J., Uusi-Rauva, K., Dadlez, M., Gingras, A.-C., Tyynelä, J., Simonati, A., Jalanko, A., Baumann, M. H.and Lalowski, M. (2015) Proteomic analysis of the palmitoyl protein thioesterase 1 interactome in SH-SY5Y human neuroblastoma cells. Journal of Proteomics 123, 42–53. doi:10.1016/j.jprot.2015.03.038

Edlich-Muth, C., Artero, J.-B., Callow, P., Przewloka, M. R., Watson, A. A., Zhang, W., Glover, D. M., Debski, J., Dadlez, M., Round, A. R., Forsyth, V. T.and Laue, E. D. (2015) The Pentameric Nucleoplasmin Fold Is Present in Drosophila FKBP39 and a Large Number of Chromatin-Related Proteins. Journal of Molecular Biology 427, 1949–1963. doi:10.1016/j.jmb.2015.03.010

Ambroziak, U., Kępczyńska-Nyk, A., Kuryłowicz, A., Wysłouch-Cieszyńska, A., Małunowicz, E. M., Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Pawłowska, E., Szcześniak, M., Dadlez, M.and Bednarczuk, T. (2015) LC-MS/MS improves screening towards 21-hydroxylase deficiency.. Gynecological endocrinology : the official journal of the International Society of Gynecological Endocrinology 31, 296–300. doi:10.3109/09513590.2014.994599

Czubinski, J., Barciszewski, J., Gilski, M., Szpotkowski, K., Debski, J., Lampart-Szczapa, E.and Jaskolski, M. (2015) Structure of γ-conglutin: insight into the quaternary structure of 7S basic globulins from legumes. Acta Cryst D Biol Crystallogr 71, 224–238. doi:10.1107/s1399004714025073

Gegeckas, A., Gudiukaitė, R., Debski, J.and Citavicius, D. (2015) Keratinous waste decomposition and peptide production by keratinase from Geobacillus stearothermophilus AD-11. International Journal of Biological Macromolecules, doi:10.1016/j.ijbiomac.2015.01.031

Zegarska, J., Hryniewiecka, E., Zochowska, D., Tszyrsznic, W., Jazwiec, R., Borowiec, A., Pawlowska, E., Dadlez, M.and Pączek, L. (2015) Mycophenolic Acid Metabolites Acyl-Glucuronide and Glucoside Affect the Occurrence of Infectious Complications and Bone Marrow Dysfunction in Liver Transplant Recipients. Annals of Transplantation 20, 483–492. doi:10.12659/aot.894954

Lewandowicz, A., Bakun, M., Kohutnicki, R., Fabijańska, A., Kistowski, M., Imiela, J.and Dadlez, M. (2015) Changes in urine proteome accompanying diabetic nephropathy progression.. Polskie Archiwum Medycyny Wewnętrznej 125, 27–38. doi:10.20452/pamw.2640

Kopera, E., Dwornyk, A., Kosson, P., Florys, K., Sączyńska, V., Dębski, J., Cecuda-Adamczewska, V., Szewczyk, B., Zagórski-Ostoja, W.and Grzelak, K. (2014) Expression, purification and characterization of glycosylated influenza H5N1 hemagglutinin produced in Pichia pastoris.. Acta Biochim Pol 61, doi:10.18388/abp.2014_1882

Ufnal, M., Jazwiec, R., Dadlez, M., Drapala, A., Sikora, M.and Skrzypecki, J. (2014) TMAO, a carnitine-derived metabolite, prolongs the hypertensive effect of Ang II in rats. Canadian Journal of Cardiology, doi:10.1016/j.cjca.2014.09.010

Dzhindzhev, N. S., Tzolovsky, G., Lipinszki, Z., Schneider, S., Lattao, R., Fu, J., Debski, J., Dadlez, M.and Glover, D. M. (2014) Plk4 Phosphorylates Ana2 to Trigger Sas6 Recruitment and Procentriole Formation. Current Biology, doi:10.1016/j.cub.2014.08.061

Kacprzyk-Stokowiec, A., Kulma, M., Traczyk, G., Kwiatkowska, K., Sobota, A.and Dadlez, M. (2014) Crucial Role of Perfringolysin O D1 Domain in Orchestrating Structural Transitions Leading to Membrane-Perforating Pores: A Hydrogen-Deuterium Exchange Study. Journal of Biological Chemistry, doi:10.1074/jbc.m114.577981

Petkauskaite, R., Lukosius, D., Dębski, J., Jasilionis, A., Dadlez, M., Kieraite, I., Timonina, A.and Kuisiene, N. (2014) Identification of proteins involved in starch and polygalacturonic acid degradation using LC/MS. Central European Journal of Biology 9, 708–716. doi:10.2478/s11535-014-0303-4

Nicholls, T. J., Zsurka, G., Peeva, V., Schöler, S., Szczesny, R. J., Cysewski, D., Reyes, A., Kornblum, C., Sciacco, M., Moggio, M., Dziembowski, A., Kunz, W. S.and Minczuk, M. (2014) Linear mtDNA fragments and unusual mtDNA rearrangements associated with pathological deficiency of MGME1 exonuclease. Human Molecular Genetics 23, 6147–6162. doi:10.1093/hmg/ddu336

Mierzejewska, K., Siwek, W., Czapinska, H., Kaus-Drobek, M., Radlinska, M., Skowronek, K., Bujnicki, J. M., Dadlez, M.and Bochtler, M. (2014) Structural basis of the methylation specificity of R.DpnI. Nucleic Acids Research 42, 8745–8754. doi:10.1093/nar/gku546

Sitkiewicz, E., Olędzki, J., Poznański, J.and Dadlez, M. (2014) Di-Tyrosine Cross-Link Decreases the Collisional Cross-Section of Aβ Peptide Dimers and Trimers in the Gas Phase: An Ion Mobility Study. PLoS ONE 9, e100200. doi:10.1371/journal.pone.0100200

Mucha, K., Bakun, M., Jaźwiec, R., Dadlez, M., Florczak, M., Bajor, M., Gala, K.and Pączek, L. (2014) Complement components, proteolysis‑related, and cell communication‑related proteins detected in urine proteomics are associated with IgA nephropathy. Polish Archives of Internal Medicine 124, 380–386. doi:10.20452/pamw.2345

Zareba-Koziol, M., Szwajda, A., Dadlez, M., Wyslouch-Cieszynska, A.and Lalowski, M. (2014) Global analysis of S-nitrosylation sites in the wild type and APP transgenic mouse brain- clues for synaptic pathology.. Molecular & Cellular Proteomics, doi:10.1074/mcp.m113.036079

Mohammed, Y., Domański, D., Jackson, A. M., Smith, D. S., Deelder, A. M., Palmblad, M.and Borchers, C. H. (2014) PeptidePicker: A scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments. Journal of Proteomics 106, 151–161. doi:10.1016/j.jprot.2014.04.018

Tarnowski, K., Fituch, K., Szczepanowski, R. H., Dadlez, M.and Kaus-Drobek, M. (2014) Patterns of structural dynamics in RACK1 protein retained throughout evolution: A hydrogen-deuterium exchange study of three orthologs. Protein Science 23, 639–651. doi:10.1002/pro.2448

Sitkiewicz, E., Kłoniecki, M., Poznański, J., Bal, W.and Dadlez, M. (2014) Factors Influencing Compact–Extended Structure Equilibrium in Oligomers of Aβ1–40 Peptide—An Ion Mobility Mass Spectrometry Study. Journal of Molecular Biology, doi:10.1016/j.jmb.2014.05.015

Płociński, P., Laubitz, D., Cysewski, D., Stoduś, K., Kowalska, K.and Dziembowski, A. (2014) Identification of Protein Partners in Mycobacteria Using a Single-Step Affinity Purification Method. PLoS ONE 9, e91380. doi:10.1371/journal.pone.0091380

Nesteruk, M., Hennig, E. E., Mikula, M., Karczmarski, J., Dzwonek, A., Goryca, K., Rubel, T., Paziewska, A., Woszczynski, M., Ledwon, J., Dabrowska, M., Dadlez, M.and Ostrowski, J. (2014) Mitochondrial-related proteomic changes during obesity and fasting in mice are greater in the liver than skeletal muscles. Funct Integr Genomics 14, 245–259. doi:10.1007/s10142-013-0342-3

Bakun, M., Senatorski, G., Rubel, T., Lukasik, A., Zielenkiewicz, P., Dadlez, M.and Paczek, L. (2014) Urine proteomes of healthy aging humans reveal extracellular matrix (ECM) alterations and immune system dysfunction. AGE 36, 299–311. doi:10.1007/s11357-013-9562-7

Karczmarski, J., Rubel, T., Paziewska, A., Mikula, M., Bujko, M., Kober, P., Dadlez, M.and Ostrowski, J. (2014) Histone H3 lysine 27 acetylation is altered in colon cancer. Clinical Proteomics 11, 24. doi:10.1186/1559-0275-11-24

Mucha, K., Bakun, M., Jaźwiec, R., Dadlez, M., Florczak, M., Bajor, M., Gala, K.and Pączek, L. (2014) Complement components, proteolysis‑related, and cell communication‑related proteins detected in urine proteomics are associated with IgA nephropathy.. Polskie Archiwum Medycyny Wewnętrznej 124, 380–386.

Kopera, E., Dwornyk, A., Kosson, P., Florys, K., Sączyńska, V., Dębski, J., Cecuda-Adamczewska, V., Szewczyk, B., Zagórski-Ostoja, W.and Grzelak, K. (2014) Expression, purification and characterization of glycosylated influenza H5N1 hemagglutinin produced in Pichia pastoris.. Acta biochimica Polonica 61, 597–602.

Czerwińska, J., Poznański, J., Dębski, J., Bukowy, Z., Bohr, V. A., Tudek, B.and Speina, E. (2014) Catalytic activities of Werner protein are affected by adduction with 4-hydroxy-2-nonenal.. Nucleic acids research 42, 11119–11135. doi:10.1093/nar/gku783

Sabath, I., Skrajna, A., Yang, X.-. c ., Dadlez, M., Marzluff, W. F.and Dominski, Z. (2013) 3'-End processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors. RNA 19, 1726–1744. doi:10.1261/rna.040360.113

Percy, A. J., Chambers, A. G., Yang, J., Jackson, A. M., Domanski, D., Burkhart, J., Sickmann, A.and Borchers, C. H. (2013) Method and platform standardization in MRM-based quantitative plasma proteomics. Journal of Proteomics 95, 66–76. doi:10.1016/j.jprot.2013.07.026

Cunha-Ferreira, I., Bento, I., Pimenta-Marques, A., Jana, S. C., Lince-Faria, M., Duarte, P., Borrego-Pinto, J., Gilberto, S., Amado, T., Brito, D., Rodrigues-Martins, A., Debski, J., Dzhindzhev, N.and Bettencourt-Dias, M. (2013) Regulation of Autophosphorylation Controls PLK4 Self-Destruction and Centriole Number. Current Biology 23, 2245–2254. doi:10.1016/j.cub.2013.09.037

Hoser, R., Żurczak, M., Lichocka, M., Zuzga, S., Dadlez, M., Samuel, M. A., Ellis, B. E., Stuttmann, J., Parker, J. E., Hennig, J.and Krzymowska, M. (2013) Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1. New Phytologist 200, 158–171. doi:10.1111/nph.12347

Sitkiewicz, E., Tarnowski, K., Poznański, J., Kulma, M.and Dadlez, M. (2013) Oligomerization Interface of RAGE Receptor Revealed by MS-Monitored Hydrogen Deuterium Exchange. PLoS ONE 8, e76353. doi:10.1371/journal.pone.0076353

Odolczyk, N., Fritsch, J., Norez, C., Servel, N., da Cunha, M. F., Bitam, S., Kupniewska, A., Wiszniewski, L., Colas, J., Tarnowski, K., Tondelier, D., Roldan, A., Saussereau, E. L., Melin-Heschel, P., Wieczorek, G., Lukacs, G. L., Dadlez, M., Faure, G., Herrmann, H., Ollero, M., Becq, F., Zielenkiewicz, P.and Edelman, A. (2013) Discovery of novel potent ΔF508-CFTR correctors that target the nucleotide binding domain. EMBO Mol Med 5, 1484–1501. doi:10.1002/emmm.201302699

Karczmarski, J., Rubel, T., Mikula, M., Wolski, J., Rutkowski, A., Zagorowicz, E., Dadlez, M.and Ostrowski, J. (2013) Pre-analytical-related variability influencing serum peptide profiles demonstrated in a mass spectrometry-based search for colorectal and prostate cancer biomarkers.. Acta Biochim Pol 60, doi:10.18388/abp.2013_2002

Orlowska, K. P., Klosowska, K., Szczesny, R. J., Cysewski, D., Krawczyk, P. S.and Dziembowski, A. (2013) A new strategy for gene targeting and functional proteomics using the DT40 cell line. Nucleic Acids Research 41, e167–e167. doi:10.1093/nar/gkt650

Bal, G., Kamhieh-Milz, J., Sterzer, V., Al-Samman, M., Debski, J., Klein, O., Kamhieh-Milz, S., Bhakdi, S.and Salama, A. (2013) Proteomic Profiling of Secreted Proteins for the Hematopoietic Support of Interleukin-Stimulated Human Umbilical Vein Endothelial Cells. Cell Transplant 22, 1185–1199. doi:10.3727/096368912x657288

Lubas, M., Damgaard, C. K., Tomecki, R., Cysewski, D., Jensen, T. H.and Dziembowski, A. (2013) Exonuclease hDIS3L2 specifies an exosome-independent 3′-5′ degradation pathway of human cytoplasmic mRNA. EMBO J 32, 1855–1868. doi:10.1038/emboj.2013.135

Tszyrsznic, W., Borowiec, A., Pawlowska, E., Jazwiec, R., Zochowska, D., Bartlomiejczyk, I., Zegarska, J., Paczek, L.and Dadlez, M. (2013) Two rapid ultra performance liquid chromatography/tandem mass spectrometry (UPLC/MS/MS) methods with common sample pretreatment for therapeutic drug monitoring of immunosuppressants compared to immunoassay. Journal of Chromatography B 928, 9–15. doi:10.1016/j.jchromb.2013.03.014

Scifo, E., Szwajda, A., Dębski, J., Uusi-Rauva, K., Kesti, T., Dadlez, M., Gingras, A.-C., Tyynelä, J., Baumann, M. H., Jalanko, A.and Lalowski, M. (2013) Drafting the CLN3 Protein Interactome in SH-SY5Y Human Neuroblastoma Cells: A Label-free Quantitative Proteomics Approach. J. Proteome Res. 12, 2101–2115. doi:10.1021/pr301125k

Giska, F., Lichocka, M., Piechocki, M., Dadlez, M., Schmelzer, E., Hennig, J.and Krzymowska, M. (2013) Phosphorylation of HopQ1, a Type III Effector from Pseudomonas syringae, Creates a Binding Site for Host 14-3-3 Proteins. PLANT PHYSIOLOGY 161, 2049–2061. doi:10.1104/pp.112.209023

Jarocki, P. (2013) Spontaneous Release of Bacteriophage Particles by Lactobacillus rhamnosus Pen. J. Microbiol. Biotechnol. 23, 357–363. doi:10.4014/jmb.1207.07037

Rozek, W., Kwasnik, M., Debski, J.and Zmudzinski, J. F. (2013) Mass spectrometry identification of granins and other proteins secreted by neuroblastoma cells. Tumor Biol. 34, 1773–1781. doi:10.1007/s13277-013-0716-0

Jarocki, P., Podleśny, M., Pawelec, J., Malinowska, A., Kowalczyk, S.and Targoński, Z. (2013) Spontaneous release of bacteriophage particles by Lactobacillus rhamnosus pen.. Journal of microbiology and biotechnology 23, 357–363.

Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Popow, M., Dadlez, M.and Bednarczuk, T. (2013) Can we accurately measure the concentration of clinically relevant vitamin D metabolites in the circulation? The problems and their consequences.. Endokrynologia Polska 64, 238–245.

Karczmarski, J., Rubel, T., Mikula, M., Wolski, J., Rutkowski, A., Zagorowicz, E., Dadlez, M.and Ostrowski, J. (2013) Pre-analytical-related variability influencing serum peptide profiles demonstrated in a mass spectrometry-based search for colorectal and prostate cancer biomarkers.. Acta biochimica Polonica 60, 417–425.

Yang, X.-C., Sabath, I., Debski, J., Kaus-Drobek, M., Dadlez, M., Marzluff, W. F.and Dominski, Z. (2012) A Complex Containing the CPSF73 Endonuclease and Other Polyadenylation Factors Associates with U7 snRNP and Is Recruited to Histone Pre-mRNA for 3'-End Processing. Molecular and Cellular Biology 33, 28–37. doi:10.1128/MCB.00653-12

Richardson, K., Denny, R., Hughes, C., Skilling, J., Sikora, J., Dadlez, M., Manteca, A., Jung, H. R., Jensen, O. N., Redeker, V., Melki, R., Langridge, J. I.and Vissers, J. P. C. (2012) A Probabilistic Framework for Peptide and Protein Quantification from Data-Dependent and Data-Independent LC-MS Proteomics Experiments. OMICS: A Journal of Integrative Biology 16, 468–482. doi:10.1089/omi.2012.0019

Malinowska, A., Kistowski, M., Bakun, M., Rubel, T., Tkaczyk, M., Mierzejewska, J.and Dadlez, M. (2012) Diffprot — software for non-parametric statistical analysis of differential proteomics data. Journal of Proteomics 75, 4062–4073. doi:10.1016/j.jprot.2012.05.030

Hennig, E. E., Mikula, M., Rubel, T., Dadlez, M.and Ostrowski, J. (2012) Comparative kinome analysis to identify putative colon tumor biomarkers. J Mol Med 90, 447–456. doi:10.1007/s00109-011-0831-6

Bystranowska, D., Szewczuk, Z., Lisowski, M., Sitkiewicz, E., Dobryszycki, P., Ożyhar, A.and Kochman, M. (2012) Intramolecular cross-linking in the native JHBP molecule. Archives of Biochemistry and Biophysics 517, 12–19. doi:10.1016/j.abb.2011.10.021

Bakun, M., Niemczyk, M., Domanski, D., Jazwiec, R., Perzanowska, A., Niemczyk, S., Kistowski, M., Fabijanska, A., Borowiec, A., Paczek, L.and Dadlez, M. (2012) Urine proteome of autosomal dominant polycystic kidney disease patients. Clinical Proteomics 9, 13. doi:10.1186/1559-0275-9-13

Kowalczyk, J. E., Kawalec, M., Beręsewicz, M., Dębski, J., Dadlez, M.and Zabłocka, B. (2012) Protein kinase C beta in postischemic brain mitochondria. Mitochondrion 12, 138–143. doi:10.1016/j.mito.2011.06.002

Zaremba-Czogalla, M., Gagat, P., Kozioł, K., Dubińska-Magiera, M., Sikora, J., Dadlez, M.and Rzepecki, R. (2011) Identification of new in vivo phosphosites on lamin Dm - the evidence of heterogeneity of phosphorylation sites in different Drosophila tissues. Nucleus 2, 478–488. doi:10.4161/nucl.2.5.17864

Rangone, H., Wegel, E., Gatt, M. K., Yeung, E., Flowers, A., Debski, J., Dadlez, M., Janssens, V., Carpenter, A. T. C.and Glover, D. M. (2011) Suppression of Scant Identifies Endos as a Substrate of Greatwall Kinase and a Negative Regulator of Protein Phosphatase 2A in Mitosis. PLoS Genetics 7, e1002225. doi:10.1371/journal.pgen.1002225

Thouverey, C., Malinowska, A., Balcerzak, M., Strzelecka-Kiliszek, A., Buchet, R., Dadlez, M.and Pikula, S. (2011) Proteomic characterization of biogenesis and functions of matrix vesicles released from mineralizing human osteoblast-like cells. Journal of Proteomics 74, 1123–1134. doi:10.1016/j.jprot.2011.04.005

Mikula, M., Rubel, T., Karczmarski, J., Goryca, K., Dadlez, M.and Ostrowski, J. (2011) Integrating proteomic and transcriptomic high-throughput surveys for search of new biomarkers of colon tumors. Funct Integr Genomics 11, 215–224. doi:10.1007/s10142-010-0200-5

Gospodarska, E., Kupniewska-Kozak, A., Goch, G.and Dadlez, M. (2011) Binding studies of truncated variants of the Aβ peptide to the V-domain of the RAGE receptor reveal Aβ residues responsible for binding. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, 592–609. doi:10.1016/j.bbapap.2011.02.011

Winiarska, B., Dwornik, A., Dębski, J., Grzelak, K., Bystranowska, D., Zalewska, M., Dadlez, M., Ożyhar, A.and Kochman, M. (2011) N-linked glycosylation of G. mellonella juvenile hormone binding protein — Comparison of recombinant mutants expressed in P. pastoris cells with native protein. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, 610–621. doi:10.1016/j.bbapap.2011.02.002

Graczyk, D., Debski, J., Muszynska, G., Bretner, M., Lefebvre, O.and Boguta, M. (2011) Casein kinase II-mediated phosphorylation of general repressor Maf1 triggers RNA polymerase III activation. Proceedings of the National Academy of Sciences 108, 4926–4931. doi:10.1073/pnas.1010010108

Przewloka, M. R., Venkei, Z., Bolanos-Garcia, V. M., Debski, J., Dadlez, M.and Glover, D. M. (2011) CENP-C Is a Structural Platform for Kinetochore Assembly. Current Biology 21, 399–405. doi:10.1016/j.cub.2011.02.005

Kłoniecki, M., Jabłonowska, A., Poznański, J., Langridge, J., Hughes, C., Campuzano, I., Giles, K.and Dadlez, M. (2011) Ion Mobility Separation Coupled with MS Detects Two Structural States of Alzheimer's Disease Aβ1–40 Peptide Oligomers. Journal of Molecular Biology 407, 110–124. doi:10.1016/j.jmb.2011.01.012

Kistowski, M.and Gambin, A. (2011) RESEARCH PAPER Optimization algorithm for de novo analysis of tandem mass spectrometry data. bta 3, 296–300. doi:10.5114/bta.2011.46545

Kupniewska-Kozak, A., Gospodarska, E.and Dadlez, M. (2010) Intertwined Structured and Unstructured Regions of exRAGE Identified by Monitoring Hydrogen–Deuterium Exchange. Journal of Molecular Biology 403, 52–65. doi:10.1016/j.jmb.2010.08.027

Brooks, M. A., Gewartowski, K., Mitsiki, E., Létoquart, J., Pache, R. A., Billier, Y., Bertero, M., Corréa, M., Czarnocki-Cieciura, M., Dadlez, M., Henriot, V., Lazar, N., Delbos, L., Lebert, D., Piwowarski, J., Rochaix, P., Böttcher, B., Serrano, L., Séraphin, B., van Tilbeurgh, H., Aloy, P., Perrakis, A.and Dziembowski, A. (2010) Systematic Bioinformatics and Experimental Validation of Yeast Complexes Reduces the Rate of Attrition during Structural Investigations. Structure 18, 1075–1082. doi:10.1016/j.str.2010.08.001

Mikula, M., Gaj, P., Dzwonek, K., Rubel, T., Karczmarski, J., Paziewska, A., Dzwonek, A., Bragoszewski, P., Dadlez, M.and Ostrowski, J. (2010) Comprehensive Analysis of the Palindromic Motif TCTCGCGAGA: A Regulatory Element of the HNRNPK Promoter. DNA Research 17, 245–260. doi:10.1093/dnares/dsq016

Wawer, I., Bucholc, M., Astier, J., Anielska‑Mazur, A., Dahan, J., Kulik, A., Wysłouch‑Cieszynska, A., Zaręba‑Kozioł, M., Krzywinska, E., Dadlez, M., Dobrowolska, G.and Wendehenne, D. (2010) Regulation of Nicotiana tabacum osmotic stress-activated protein kinase and its cellular partner GAPDH by nitric oxide in response to salinity . Biochemical Journal 429, 73–83. doi:10.1042/BJ20100492

Kedracka-Krok, S., Fic, E., Jankowska, U., Jaciuk, M., Gruca, P., Papp, M., Kusmider, M., Solich, J., Debski, J., Dadlez, M.and Dziedzicka-Wasylewska, M. (2010) Effect of chronic mild stress and imipramine on the proteome of the rat dentate gyrus. Journal of Neurochemistry 113, 848–859. doi:10.1111/j.1471-4159.2010.06652.x

Rózga, M., Kłoniecki, M., Dadlez, M.and Bal, W. (2010) A Direct Determination of the Dissociation Constant for the Cu(II) Complex of Amyloid β 1−40 Peptide. Chemical Research in Toxicology 23, 336–340. doi:10.1021/tx900344n

Arnaiz, O., Malinowska, A., Klotz, C., Sperling, L., Dadlez, M., Koll, F.and Cohen, J. (2009) Cildb: a knowledgebase for centrosomes and cilia. Database 2009, bap022–bap022. doi:10.1093/database/bap022

Sikora, J., Towpik, J., Graczyk, D., Kistowski, M., Rubel, T., Poznanski, J., Langridge, J., Hughes, C., Dadlez, M.and Boguta, M. (2009) Yeast prion [PSI+] lowers the levels of mitochondrial prohibitins. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1793, 1703–1709. doi:10.1016/j.bbamcr.2009.08.003

Bakun, M., Karczmarski, J., Poznanski, J., Rubel, T., Rozga, M., Malinowska, A., Sands, D., Hennig, E., Oledzki, J., Ostrowski, J.and Dadlez, M. (2009) An integrated LC-ESI-MS platform for quantitation of serum peptide ladders. Application for colon carcinoma study. PROTEOMICS - CLINICAL APPLICATIONS 3, 932–946. doi:10.1002/prca.200800111

Konopka-Postupolska, D., Clark, G., Goch, G., Debski, J., Floras, K., Cantero, A., Fijolek, B., Roux, S.and Hennig, J. (2009) The Role of Annexin 1 in Drought Stress in Arabidopsis. PLANT PHYSIOLOGY 150, 1394–1410. doi:10.1104/pp.109.135228

Trudel, S., Kelly, M., Fritsch, J., Nguyen-Khoa, T., Thérond, P., Couturier, M., Dadlez, M., Debski, J., Touqui, L., Vallée, B., Ollero, M., Edelman, A.and Brouillard, F. (2009) Peroxiredoxin 6 Fails to Limit Phospholipid Peroxidation in Lung from Cftr-Knockout Mice Subjected to Oxidative Challenge. PLoS ONE 4, e6075. doi:10.1371/journal.pone.0006075

Jagusztyn-Krynicka, E. K., Dadlez, M., Grabowska, A.and Roszczenko, P. (2009) Proteomic technology in the design of new effective antibacterial vaccines. Expert Review of Proteomics 6, 315–330. doi:10.1586/epr.09.47

Gambin, A., Szczurek, E., Dutkowski, J., Bakun, M.and Dadlez, M. (2009) Classification of peptide mass fingerprint data by novel no-regret boosting method. Computers in Biology and Medicine 39, 460–473. doi:10.1016/j.compbiomed.2009.03.006

Petrakis, S., Malinowska, A., Dadlez, M.and Sklaviadis, T. (2009) ['Identification of proteins co-purifying with scrapie infectivity']. ['Journal of Proteomics'] 72, 690–694. doi:10.1016/j.jprot.2009.01.025

Rózga, M., Protas, A. M., Jabłonowska, A., Dadlez, M.and Bal, W. (2009) The Cu(ii) complex of Aβ40 peptide in ammonium acetate solutions. Evidence for ternary species formation. Chemical Communications, 1374. doi:10.1039/b819616h

Kowalczyk, J. E., Beręsewicz, M., Gajkowska, B.and Zabłocka, B. (2009) Association of protein kinase C delta and phospholipid scramblase 3 in hippocampal mitochondria correlates with neuronal vulnerability to brain ischemia. Neurochemistry International 55, 157–163. doi:10.1016/j.neuint.2009.01.009

Havrylov, S., Rzhepetskyy, Y., Malinowska, A., Drobot, L.and Redowicz, M. (2009) Proteins recruited by SH3 domains of Ruk/CIN85 adaptor identified by LC-MS/MS. Proteome Science 7, 21. doi:10.1186/1477-5956-7-21

Rutkowska-Wlodarczyk, I., Stepinski, J., Dadlez, M., Darzynkiewicz, E., Stolarski, R.and Niedzwiecka, A. (2008) Structural Changes of eIF4E upon Binding to the mRNA 5′ Monomethylguanosine and Trimethylguanosine Cap † . Biochemistry 47, 2710–2720. doi:10.1021/bi701168z

Gogendeau, D., Klotz, C., Arnaiz, O., Malinowska, A., Dadlez, M., de Loubresse, N. G., Ruiz, F., Koll, F.and Beisson, J. (2008) Functional diversification of centrins and cell morphological complexity. Journal of Cell Science 121, 65–74. doi:10.1242/jcs.019414

Balcerzak, M., Malinowska, A., Thouverey, C., Sekrecka, A., Dadlez, M., Buchet, R.and Pikula, S. (2008) Proteome analysis of matrix vesicles isolated from femurs of chicken embryo. PROTEOMICS 8, 192–205. doi:10.1002/pmic.200700612

Rózga, M., Kłoniecki, M., Jabłonowska, A., Dadlez, M.and Bal, W. (2007) The binding constant for amyloid Aβ40 peptide interaction with human serum albumin. Biochemical and Biophysical Research Communications 364, 714–718. doi:10.1016/j.bbrc.2007.10.080

Ostrowski, J., Mikula, M., Karczmarski, J., Rubel, T., Wyrwicz, L. S., Bragoszewski, P., Gaj, P., Dadlez, M., Butruk, E.and Regula, J. (2007) Molecular defense mechanisms of Barrett’s metaplasia estimated by an integrative genomics. Journal of Molecular Medicine 85, 733–743. doi:10.1007/s00109-007-0176-3

Gambin, A., Dutkowski, J., Karczmarski, J., Kluge, B., Kowalczyk, K., Ostrowski, J., Poznański, J., Tiuryn, J., Bakun, M.and Dadlez, M. (2007) Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures. International Journal of Mass Spectrometry 260, 20–30. doi:10.1016/j.ijms.2006.06.011

Burza, A. M., Pekala, I., Sikora, J., Siedlecki, P., Malagocki, P., Bucholc, M., Koper, L., Zielenkiewicz, P., Dadlez, M.and Dobrowolska, G. (2006) Nicotiana tabacum Osmotic Stress-activated Kinase Is Regulated by Phosphorylation on Ser-154 and Ser-158 in the Kinase Activation Loop. Journal of Biological Chemistry 281, 34299–34311. doi:10.1074/jbc.M601977200

Mikula, M., Dzwonek, A., Karczmarski, J., Rubel, T., Dadlez, M., Wyrwicz, L. S., Bomsztyk, K.and Ostrowski, J. (2006) Landscape of the hnRNP K protein–protein interactome. PROTEOMICS 6, 2395–2406. doi:10.1002/pmic.200500632

Mikula, M., Karczmarski, J., Dzwonek, A., Rubel, T., Hennig, E., Dadlez, M., Bujnicki, J. M., Bomsztyk, K.and Ostrowski, J. (2006) Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1764, 299–306. doi:10.1016/j.bbapap.2005.12.004

Hinzpeter, A. (2005) Association between Hsp90 and the ClC-2 chloride channel upregulates channel function. AJP: Cell Physiology 290, C45–C56. doi:10.1152/ajpcell.00209.2005

Davezac, N., Tondelier, D., Lipecka, J., Fanen, P., Demaugre, F., Debski, J., Dadlez, M., Schrattenholz, A., Cahill, M. A.and Edelman, A. (2004) Global proteomic approach unmasks involvement of keratins 8 and 18 in the delivery of cystic fibrosis transmembrane conductance regulator (CFTR)/ΔF508-CFTR to the plasma membrane. PROTEOMICS 4, 3833–3844. doi:10.1002/pmic.200400850

Jablonowska, A., Bakun, M., Kupniewska-Kozak, A.and Dadlez, M. (2004) Alzheimer's Disease Aβ Peptide Fragment 10–30 Forms a Spectrum of Metastable Oligomers with Marked Preference for N to N and C to C Monomer Termini Proximity. Journal of Molecular Biology 344, 1037–1049. doi:10.1016/j.jmb.2004.09.083

Zuberek, J., Jemielity, J., Jablonowska, A., Stepinski, J., Dadlez, M., Stolarski, R.and Darzynkiewicz, E. (2004) Influence of Electric Charge Variation at Residues 209 and 159 on the Interaction of eIF4E with the mRNA 5‘ Terminus † . Biochemistry 43, 5370–5379. doi:10.1021/bi030266t

Dębski, J., Wysłouch-Cieszyńska, A., Dadlez, M., Grzelak, K., Kłudkiewicz, B., Kołodziejczyk, R., Lalik, A., Ożyhar, A.and Kochman, M. (2004) Positions of disulfide bonds and N-glycosylation site in juvenile hormone binding protein. Archives of Biochemistry and Biophysics 421, 260–266. doi:10.1016/j.abb.2003.10.019

Grzelak, K., Kłudkiewicz, B., Kolomiets, L. I., Dȩbski, J., Dadlez, M., Lalik, A., Ożyhar, A.and Kochman, M. (2003) Overexpression of juvenile hormone binding protein in bacteria and Pichia pastoris. Protein Expression and Purification 31, 173–180. doi:10.1016/s1046-5928(03)00192-x

Dominski, Z., Yang, X.-. cui ., Kaygun, H., Dadlez, M.and Marzluff, W. F. (2003) A 3′ Exonuclease that Specifically Interacts with the 3′ End of Histone mRNA. Molecular Cell 12, 295–305. doi:10.1016/s1097-2765(03)00278-8

JABLONOWSKA, A.and DADLEZ, M. (2003) Ab peptide oligomers - potential neurotoxic agents in Alzheimer disease. Polimery 48, 35–43. doi:10.14314/polimery.2003.035

ZUBEREK, J. (2003) Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: Intein-mediated protein ligation strategy to obtain phosphorylated protein. RNA 9, 52–61. doi:10.1261/rna.2133403

Kurowski, M. A., Sasin, J. M., Feder, M., Debski, J.and Bujnicki, J. M. (2003) Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures. BMC Bioinformatics 4, 9. doi:10.1186/1471-2105-4-9

Bujnicki, J. M., Leach, R. A., Debski, J.and Rychlewski, L. (2002) Bioinformatic analyses of the tRNA: (guanine 26, N2,N2)-dimethyltransferase (Trm1) family.. Journal of molecular microbiology and biotechnology 4, 405–415.

Niedzwiecka, A., Marcotrigiano, J., Stepinski, J., Jankowska-Anyszka, M., Wyslouch-Cieszynska, A., Dadlez, M., Gingras, A.-C., Mak, P., Darzynkiewicz, E., Sonenberg, N., Burley, S. K.and Stolarski, R. (2002) Biophysical Studies of eIF4E Cap-binding Protein: Recognition of mRNA 5′ Cap Structure and Synthetic Fragments of eIF4G and 4E-BP1 Proteins. Journal of Molecular Biology 319, 615–635. doi:10.1016/S0022-2836(02)00328-5

Buczek, O. (2002) Analysis of serine proteinase-inhibitor interaction by alanine shaving. Protein Science 11, 806–819. doi:10.1110/ps.3510102

Kiczak, L., Kasztura, M., Koscielska-Kasprzak, K., Dadlez, M.and Otlewski, J. (2001) Selection of potent chymotrypsin and elastase inhibitors from M13 phage library of basic pancreatic trypsin inhibitor (BPTI). Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology 1550, 153–163. doi:10.1016/s0167-4838(01)00282-5

Otlewski, J., Jaskólski, M., Buczek, O., Cierpicki, T., Czapińska, H., Krowarsch, D., Smalas, A. O., Stachowiak, D., Szpineta, A.and Dadlez, M. (2001) Structure-function relationship of serine protease-protein inhibitor interaction.. Acta Biochim Pol 48, 419–428. doi:10.18388/abp.2001_3926

Grzesiak, A., Krokoszynska, I., Krowarsch, D., Buczek, O., Dadlez, M.and Otlewski, J. (2000) Inhibition of Six Serine Proteinases of the Human Coagulation System by Mutants of Bovine Pancreatic Trypsin Inhibitor. Journal of Biological Chemistry 275, 33346–33352. doi:10.1074/jbc.m006085200

Grzesiak, A., Helland, R., Smalås, A. O., Krowarsch, D., Dadlez, M.and Otlewski, J. (2000) Substitutions at the P1′ position in BPTI strongly affect the association energy with serine proteinases. Journal of Molecular Biology 301, 205–217. doi:10.1006/jmbi.2000.3935

Dadlez, M. (1999) Folding initiation sites and protein folding.. Acta Biochim Pol 46, 487–508. doi:10.18388/abp.1999_4126

Krowarsch, D., Dadlez, M., Buczek, O., Krokoszynska, I., Smalas, A. O.and Otlewski, J. (1999) Interscaffolding additivity: binding of P1 variants of bovine pancreatic trypsin inhibitor to four serine proteases. Journal of Molecular Biology 289, 175–186. doi:10.1006/jmbi.1999.2757

Helland, R., Otlewski, J., Sundheim, O., Dadlez, M.and Smalås, A. O. (1999) The crystal structures of the complexes between bovine β-trypsin and ten P1 variants of BPTI. Journal of Molecular Biology 287, 923–942. doi:10.1006/jmbi.1999.2654

Zdanowski, K.and Dadlez, M. (1999) Stability of the residual structure in unfolded BPTI in different conditions of temperature and solvent composition measured by disulphide kinetics and double mutant cycle analysis. Journal of Molecular Biology 287, 433–445. doi:10.1006/jmbi.1999.2622

Kiczak, L., Koscielska, K., Otlewski, J., Czerwinski, M.and Dadlez, M. (1999) Phage display selection of P1 mutants of BPTI directed against five different serine proteinases.. Biological chemistry 380, 101–105. doi:10.1515/BC.1999.014

Krokoszynska, I., Dadlez, M.and Otlewski, J. (1998) Structure of single-disulfide variants of bovine pancreatic trypsin inhibitor (BPTI) as probed by their binding to bovine β-trypsin. Journal of Molecular Biology 275, 503–513. doi:10.1006/jmbi.1997.1460

Dadlez, M. (1997) Disulfide bonds in protein folding studies: friends or foes?. Acta Biochim Pol 44, 433–452. doi:10.18388/abp.1997_4395