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2017

Gozdz, A., Nikolaienko, O., Urbanska, M., Cymerman, I. A., Sitkiewicz, E., Blazejczyk, M., Dadlez, M., Bramham, C. R., Jaworski, J. (2017) GSK3α and GSK3β Phosphorylate Arc and Regulate its Degradation. Front. Mol. Neurosci. 10, doi:10.3389/fnmol.2017.00192
Kulma, M., Kacprzyk-Stokowiec, A., Kwiatkowska, K., Traczyk, G., Sobota, A., Dadlez, M. (2017) R468A mutation in perfringolysin O destabilizes toxin structure and induces membrane fusion. Biochimica et Biophysica Acta (BBA) - Biomembranes, doi:10.1016/j.bbamem.2017.03.001
Krol, K., Jendrysek, J., Debski, J., Skoneczny, M., Kurlandzka, A., Kaminska, J., Dadlez, M., Skoneczna, A. (2017) Ribosomal DNA status inferred from DNA cloud assays and mass spectrometry identification of agarose-squeezed proteins interacting with chromatin (ASPIC-MS). Oncotarget, doi:10.18632/oncotarget.15332
Premchandar, A., Kupniewska, A., Bonna, A., Faure, G., Fraczyk, T., Roldan, A., Hoffmann, B., Faria da Cunha, M., Herrmann, H., Lukacs, G. L., Edelman, A., Dadlez, M. (2017) New insights into interactions between the nucleotide-binding domain of CFTR and keratin 8. Protein Science 26, 343–354. doi:10.1002/pro.3086
Ambroziak, U., Kuryłowicz, A., Kępczyńska-Nyk, A., Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Samborowska, E., Dadlez, M., Wysłouch-Cieszyńska, A., Bednarczuk, T. (2017) Total testosterone to dihydrotestosterone ratio assessed by LC-MS/MS predicts a worse metabolic profile not only in PCOS patients.. Ginekologia polska 88, 5–8. doi:10.5603/GP.a2017.0001

2016

Kistowski, M., Dębski, J., Karczmarski, J., Paziewska, A., Olędzki, J., Mikula, M., Ostrowski, J., Dadlez, M. (2016) A Strong Neutrophil Elastase Proteolytic Fingerprint Marks the Carcinoma Tumor Proteome. Molecular & Cellular Proteomics 16, 213–227. doi:10.1074/mcp.m116.058818
Podszywalow-Bartnicka, P., Cmoch, A., Wolczyk, M., Bugajski, L., Tkaczyk, M., Dadlez, M., Nieborowska-Skorska, M., Koromilas, A. E., Skorski, T., Piwocka, K. (2016) Increased phosphorylation of eIF2α in chronic myeloid leukemia cells stimulates secretion of matrix modifying enzymes. Oncotarget, doi:10.18632/oncotarget.12941
Domanski, D., Zegrocka-Stendel, O., Perzanowska, A., Dutkiewicz, M., Kowalewska, M., Grabowska, I., Maciejko, D., Fogtman, A., Dadlez, M., Koziak, K. (2016) Molecular Mechanism for Cellular Response to β-Escin and Its Therapeutic Implications. PLOS ONE 11, e0164365. doi:10.1371/journal.pone.0164365
Premchandar, A., Mücke, N., Poznański, J., Wedig, T., Kaus-Drobek, M., Herrmann, H., Dadlez, M. (2016) Structural Dynamics of the Vimentin Coiled-Coil Contact Regions involved in Filament Assembly as revealed by Hydrogen-Deuterium Exchange. Journal of Biological Chemistry, jbc.M116.748145. doi:10.1074/jbc.m116.748145
Czarnecka, A., Milewski, K., Jaźwiec, R., Zielińska, M. (2016) Intracerebral Administration of S-Adenosylhomocysteine or S-Adenosylmethionine Attenuates the Increases in the Cortical Extracellular Levels of Dimethylarginines Without Affecting cGMP Level in Rats with Acute Liver Failure. Neurotoxicity Research 31, 99–108. doi:10.1007/s12640-016-9668-7
Per a-Kajan, J., Utyro, O., Rusek, M., Malinowska, A., Sitkiewicz, E., Jakubowski, H. (2016) N-Homocysteinylation impairs collagen cross-linking in cystathionine  -synthase-deficient mice: a novel mechanism of connective tissue abnormalities. The FASEB Journal 30, 3810–3821. doi:10.1096/fj.201600539
Buszewicz, D., Archacki, R., Palusiński, A., Kotliński, M., Fogtman, A., Iwanicka-Nowicka, R., Sosnowska, K., Kuciński, J., Pupel, P., Olędzki, J., Dadlez, M., Misicka, A., Jerzmanowski, A., Koblowska, M. K. (2016) HD2C histone deacetylase and a SWI/SNF chromatin remodelling complex interact and both are involved in mediating the heat stress response in Arabidopsis . Plant, Cell & Environment 39, 2108–2122. doi:10.1111/pce.12756
Domanski, D., Perzanowska, A., Kistowski, M., Wojtas, G., Michalak, A., Krasowski, G., Dadlez, M. (2016) A Multiplexed Cytokeratin Analysis Using Targeted Mass Spectrometry Reveals Specific Profiles in Cancer-Related Pleural Effusions. Neoplasia 18, 399–412. doi:10.1016/j.neo.2016.06.002
Faure, G., Bakouh, N., Lourdel, S., Odolczyk, N., Premchandar, A., Servel, N., Hatton, A., Ostrowski, M. K., Xu, H., Saul, F. A., Moquereau, C., Bitam, S., Pranke, I., Planelles, G., Teulon, J., Herrmann, H., Roldan, A., Zielenkiewicz, P., Dadlez, M., Lukacs, G. L., Sermet-Gaudelus, I., Ollero, M., Corringer, P.-J., Edelman, A. (2016) Rattlesnake Phospholipase A2 Increases CFTR-Chloride Channel Current and Corrects ∆F508CFTR Dysfunction: Impact in Cystic Fibrosis. Journal of Molecular Biology 428, 2898–2915. doi:10.1016/j.jmb.2016.05.016
Krzywińska, E., Bucholc, M., Kulik, A., Ciesielski, A., Lichocka, M., Dębski, J., Ludwików, A., Dadlez, M., Rodriguez, P. L., Dobrowolska, G. (2016) Phosphatase ABI1 and okadaic acid-sensitive phosphoprotein phosphatases inhibit salt stress-activated SnRK2.4 kinase. BMC Plant Biol 16, doi:10.1186/s12870-016-0817-1
Zegarska, J., Hryniewiecka, E., Zochowska, D., Samborowska, E., Jazwiec, R., Borowiec, A., Tszyrsznic, W., Chmura, A., Nazarewski, S., Dadlez, M., Paczek, L. (2016) Tacrolimus Metabolite M-III May Have Nephrotoxic and Myelotoxic Effects and Increase the Incidence of Infections in Kidney Transplant Recipients. Transplantation Proceedings 48, 1539–1542. doi:10.1016/j.transproceed.2015.12.133
Hryniewiecka, E., Żegarska, J., Żochowska, D., Jaźwiec, R., Borowiec, A., Samborowska, E., Tszyrsznic, W., Dadlez, M., Pączek, L. (2016) Hydroxylated, Hydroxymethylated, Dihydroxylated, and Trihydroxylated Cyclosporine Metabolites Can Be Nephrotoxic in Kidney Transplant Recipients. Transplantation Proceedings 48, 1551–1555. doi:10.1016/j.transproceed.2016.01.090
Zochowska, D., Zegarska, J., Hryniewiecka, E., Samborowska, E., Jazwiec, R., Tszyrsznic, W., Borowiec, A., Dadlez, M., Paczek, L. (2016) Determination of Concentrations of Azathioprine Metabolites 6-Thioguanine and 6-Methylmercaptopurine in Whole Blood With the Use of Liquid Chromatography Combined With Mass Spectrometry. Transplantation Proceedings 48, 1836–1839. doi:10.1016/j.transproceed.2016.01.084
Slomnicki, L. P., Malinowska, A., Kistowski, M., Palusinski, A., Zheng, J.-J., Sepp, M., Timmusk, T., Dadlez, M., Hetman, M. (2016) Nucleolar Enrichment of Brain Proteins with Critical Roles in Human Neurodevelopment. Mol Cell Proteomics 15, 2055–2075. doi:10.1074/mcp.m115.051920
McKenzie, C., Bassi, Z. I., Debski, J., Gottardo, M., Callaini, G., Dadlez, M., D'Avino, P. P. (2016) Cross-regulation between Aurora B and Citron kinase controls midbody architecture in cytokinesis. Open Biol. 6, 160019. doi:10.1098/rsob.160019
Skrajna, A., Yang, X.-. cui ., Tarnowski, K., Fituch, K., Marzluff, W. F., Dominski, Z., Dadlez, M. (2016) Mapping the Interaction Network of Key Proteins Involved in Histone mRNA Generation: A Hydrogen/Deuterium Exchange Study. Journal of Molecular Biology 428, 1180–1196. doi:10.1016/j.jmb.2016.01.031
Richter, M. M., Poznanski, J., Zdziarska, A., Czarnocki-Cieciura, M., Lipinszki, Z., Dadlez, M., Glover, D. M., Przewloka, M. R. (2016) Network of protein interactions within the Drosophila inner kinetochore . Open Biol. 6, 150238. doi:10.1098/rsob.150238
Kotliński, M., Rutowicz, K., Kniżewski, Ł., Palusiński, A., Olędzki, J., Fogtman, A., Rubel, T., Koblowska, M., Dadlez, M., Ginalski, K., Jerzmanowski, A. (2016) Histone H1 Variants in Arabidopsis Are Subject to Numerous Post-Translational Modifications, Both Conserved and Previously Unknown in Histones, Suggesting Complex Functions of H1 in Plants. PLOS ONE 11, e0147908. doi:10.1371/journal.pone.0147908
Trzeciecka, A., Klossowski, S., Bajor, M., Zagozdzon, R., Gaj, P., Muchowicz, A., Malinowska, A., Czerwoniec, A., Barankiewicz, J., Domagala, A., Chlebowska, J., Prochorec-Sobieszek, M., Winiarska, M., Ostaszewski, R., Gwizdalska, I., Golab, J., Nowis, D., Firczuk, M. (2016) Dimeric peroxiredoxins are druggable targets in human Burkitt lymphoma. Oncotarget, doi:10.18632/oncotarget.6435
Drabikowski, K., Dadlez, M. (2016) Dissecting SUMO Dynamics by Mass Spectrometry. Methods in Molecular Biology, 291–298. doi:10.1007/978-1-4939-3756-1_18

2015

Nieckarz, M., Raczkowska, A., Dębski, J., Kistowski, M., Dadlez, M., Heesemann, J., Rossier, O., Brzostek, K. (2015) Impact of OmpR on the membrane proteome of Yersinia enterocolitica in different environments: repression of major adhesin YadA and heme receptor HemR . Environ Microbiol, doi:10.1111/1462-2920.13165
Premchandar, A., Kupniewska, A., Tarnowski, K., Mücke, N., Mauermann, M., Kaus–Drobek, M., Edelman, A., Herrmann, H., Dadlez, M. (2015) Analysis of distinct molecular assembly complexes of keratin K8 and K18 by hydrogen-deuterium exchange. Journal of Structural Biology, doi:10.1016/j.jsb.2015.10.001
Jastrzebska, Z., Kaminska, J., Chelstowska, A., Domanska, A., Rzepnikowska, W., Sitkiewicz, E., Cholbinski, P., Gourlay, C., Plochocka, D., Zoladek, T. (2015) Mimicking the phosphorylation of Rsp5 in PKA site T761 affects its function and cellular localization. European Journal of Cell Biology, doi:10.1016/j.ejcb.2015.10.005
Kazazić, S., Bertoša, B., Luić, M., Mikleušević, G., Tarnowski, K., Dadlez, M., Narczyk, M., Bzowska, A. (2015) New Insights into Active Site Conformation Dynamics of E. coli PNP Revealed by Combined H/D Exchange Approach and Molecular Dynamics Simulations. J. Am. Soc. Mass Spectrom., doi:10.1007/s13361-015-1239-2
Scifo, E., Szwajda, A., Soliymani, R., Pezzini, F., Bianchi, M., Dapkunas, A., Dębski, J., Uusi-Rauva, K., Dadlez, M., Gingras, A.-C., Tyynelä, J., Simonati, A., Jalanko, A., Baumann, M. H., Lalowski, M. (2015) Quantitative analysis of PPT1 interactome in human neuroblastoma cells. Data in Brief 4, 207–216. doi:10.1016/j.dib.2015.05.016
Tarczewska, A., Kozłowska, M., Dobryszycki, P., Kaus-Drobek, M., Dadlez, M., Ożyhar, A. (2015) Insight into the Unfolding Properties of Chd64, a Small, Single Domain Protein with a Globular Core and Disordered Tails. PLOS ONE 10, e0137074. doi:10.1371/journal.pone.0137074
Hennig, E. E., Piatkowska, M., Karczmarski, J., Goryca, K., Brewczynska, E., Jazwiec, R., Kluska, A., Omiotek, R., Paziewska, A., Dadlez, M., Ostrowski, J. (2015) Limited predictive value of achieving beneficial plasma (Z)-endoxifen threshold level by CYP2D6 genotyping in tamoxifen-treated Polish women with breast cancer. BMC Cancer 15, doi:10.1186/s12885-015-1575-4
Edlich-Muth, C., Artero, J.-B., Callow, P., Przewloka, M. R., Watson, A. A., Zhang, W., Glover, D. M., Debski, J., Dadlez, M., Round, A. R., Forsyth, V. T., Laue, E. D. (2015) The Pentameric Nucleoplasmin Fold Is Present in Drosophila FKBP39 and a Large Number of Chromatin-Related Proteins. Journal of Molecular Biology 427, 1949–1963. doi:10.1016/j.jmb.2015.03.010
Ambroziak, U., Kępczyńska-Nyk, A., Kuryłowicz, A., Wysłouch-Cieszyńska, A., Małunowicz, E. M., Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Pawłowska, E., Szcześniak, M., Dadlez, M., Bednarczuk, T. (2015) LC-MS/MS improves screening towards 21-hydroxylase deficiency.. Gynecological endocrinology : the official journal of the International Society of Gynecological Endocrinology 31, 296–300. doi:10.3109/09513590.2014.994599
Gegeckas, A., Gudiukaitė, R., Debski, J., Citavicius, D. (2015) Keratinous waste decomposition and peptide production by keratinase from Geobacillus stearothermophilus AD-11. International Journal of Biological Macromolecules, doi:10.1016/j.ijbiomac.2015.01.031
Zegarska, J., Hryniewiecka, E., Zochowska, D., Tszyrsznic, W., Jazwiec, R., Borowiec, A., Pawlowska, E., Dadlez, M., Pączek, L. (2015) Mycophenolic Acid Metabolites Acyl-Glucuronide and Glucoside Affect the Occurrence of Infectious Complications and Bone Marrow Dysfunction in Liver Transplant Recipients. Annals of Transplantation 20, 483–492. doi:10.12659/aot.894954
Lewandowicz, A., Bakun, M., Kohutnicki, R., Fabijańska, A., Kistowski, M., Imiela, J., Dadlez, M. (2015) Changes in urine proteome accompanying diabetic nephropathy progression.. Polskie Archiwum Medycyny Wewnętrznej 125, 27–38.

2014

Ufnal, M., Jazwiec, R., Dadlez, M., Drapala, A., Sikora, M., Skrzypecki, J. (2014) TMAO, a carnitine-derived metabolite, prolongs the hypertensive effect of Ang II in rats. Canadian Journal of Cardiology, doi:10.1016/j.cjca.2014.09.010
Dzhindzhev, N. S., Tzolovsky, G., Lipinszki, Z., Schneider, S., Lattao, R., Fu, J., Debski, J., Dadlez, M., Glover, D. M. (2014) Plk4 Phosphorylates Ana2 to Trigger Sas6 Recruitment and Procentriole Formation. Current Biology, doi:10.1016/j.cub.2014.08.061
Kacprzyk-Stokowiec, A., Kulma, M., Traczyk, G., Kwiatkowska, K., Sobota, A., Dadlez, M. (2014) Crucial Role of Perfringolysin O D1 Domain in Orchestrating Structural Transitions Leading to Membrane-Perforating Pores: A Hydrogen-Deuterium Exchange Study. Journal of Biological Chemistry, doi:10.1074/jbc.m114.577981
Petkauskaite, R., Lukosius, D., Dębski, J., Jasilionis, A., Dadlez, M., Kieraite, I., Timonina, A., Kuisiene, N. (2014) Identification of proteins involved in starch and polygalacturonic acid degradation using LC/MS. Central European Journal of Biology 9, 708–716. doi:10.2478/s11535-014-0303-4
Mierzejewska, K., Siwek, W., Czapinska, H., Kaus-Drobek, M., Radlinska, M., Skowronek, K., Bujnicki, J. M., Dadlez, M., Bochtler, M. (2014) Structural basis of the methylation specificity of R.DpnI. Nucleic Acids Research 42, 8745–8754. doi:10.1093/nar/gku546
Sitkiewicz, E., Olędzki, J., Poznański, J., Dadlez, M. (2014) Di-Tyrosine Cross-Link Decreases the Collisional Cross-Section of Aβ Peptide Dimers and Trimers in the Gas Phase: An Ion Mobility Study. PLoS ONE 9, e100200. doi:10.1371/journal.pone.0100200
Zareba-Koziol, M., Szwajda, A., Dadlez, M., Wyslouch-Cieszynska, A., Lalowski, M. (2014) Global analysis of S-nitrosylation sites in the wild type and APP transgenic mouse brain- clues for synaptic pathology.. Molecular & Cellular Proteomics, doi:10.1074/mcp.m113.036079
Mohammed, Y., Domański, D., Jackson, A. M., Smith, D. S., Deelder, A. M., Palmblad, M., Borchers, C. H. (2014) PeptidePicker: A scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments. Journal of Proteomics 106, 151–161. doi:10.1016/j.jprot.2014.04.018
Tarnowski, K., Fituch, K., Szczepanowski, R. H., Dadlez, M., Kaus-Drobek, M. (2014) Patterns of structural dynamics in RACK1 protein retained throughout evolution: A hydrogen-deuterium exchange study of three orthologs. Protein Science 23, 639–651. doi:10.1002/pro.2448
Sitkiewicz, E., Kłoniecki, M., Poznański, J., Bal, W., Dadlez, M. (2014) Factors Influencing Compact–Extended Structure Equilibrium in Oligomers of Aβ1–40 Peptide—An Ion Mobility Mass Spectrometry Study. Journal of Molecular Biology, doi:10.1016/j.jmb.2014.05.015
Nesteruk, M., Hennig, E. E., Mikula, M., Karczmarski, J., Dzwonek, A., Goryca, K., Rubel, T., Paziewska, A., Woszczynski, M., Ledwon, J., Dabrowska, M., Dadlez, M., Ostrowski, J. (2014) Mitochondrial-related proteomic changes during obesity and fasting in mice are greater in the liver than skeletal muscles. Funct Integr Genomics 14, 245–259. doi:10.1007/s10142-013-0342-3
Bakun, M., Senatorski, G., Rubel, T., Lukasik, A., Zielenkiewicz, P., Dadlez, M., Paczek, L. (2014) Urine proteomes of healthy aging humans reveal extracellular matrix (ECM) alterations and immune system dysfunction. AGE 36, 299–311. doi:10.1007/s11357-013-9562-7
Karczmarski, J., Rubel, T., Paziewska, A., Mikula, M., Bujko, M., Kober, P., Dadlez, M., Ostrowski, J. (2014) Histone H3 lysine 27 acetylation is altered in colon cancer. Clinical Proteomics 11, 24. doi:10.1186/1559-0275-11-24
Mucha, K., Bakun, M., Jaźwiec, R., Dadlez, M., Florczak, M., Bajor, M., Gala, K., Pączek, L. (2014) Complement components, proteolysis‑related, and cell communication‑related proteins detected in urine proteomics are associated with IgA nephropathy.. Polskie Archiwum Medycyny Wewnętrznej 124, 380–386.
Kopera, E., Dwornyk, A., Kosson, P., Florys, K., Sączyńska, V., Dębski, J., Cecuda-Adamczewska, V., Szewczyk, B., Zagórski-Ostoja, W., Grzelak, K. (2014) Expression, purification and characterization of glycosylated influenza H5N1 hemagglutinin produced in Pichia pastoris.. Acta biochimica Polonica 61, 597–602.
Czerwińska, J., Poznański, J., Dębski, J., Bukowy, Z., Bohr, V. A., Tudek, B., Speina, E. (2014) Catalytic activities of Werner protein are affected by adduction with 4-hydroxy-2-nonenal.. Nucleic acids research 42, 11119–11135. doi:10.1093/nar/gku783

2013

Sabath, I., Skrajna, A., Yang, X.-. c ., Dadlez, M., Marzluff, W. F., Dominski, Z. (2013) 3'-End processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors. RNA 19, 1726–1744. doi:10.1261/rna.040360.113
Percy, A. J., Chambers, A. G., Yang, J., Jackson, A. M., Domanski, D., Burkhart, J., Sickmann, A., Borchers, C. H. (2013) Method and platform standardization in MRM-based quantitative plasma proteomics. Journal of Proteomics 95, 66–76. doi:10.1016/j.jprot.2013.07.026
Cunha-Ferreira, I., Bento, I., Pimenta-Marques, A., Jana, S. C., Lince-Faria, M., Duarte, P., Borrego-Pinto, J., Gilberto, S., Amado, T., Brito, D., Rodrigues-Martins, A., Debski, J., Dzhindzhev, N., Bettencourt-Dias, M. (2013) Regulation of Autophosphorylation Controls PLK4 Self-Destruction and Centriole Number. Current Biology 23, 2245–2254. doi:10.1016/j.cub.2013.09.037
Hoser, R., Żurczak, M., Lichocka, M., Zuzga, S., Dadlez, M., Samuel, M. A., Ellis, B. E., Stuttmann, J., Parker, J. E., Hennig, J., Krzymowska, M. (2013) Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1. New Phytologist 200, 158–171. doi:10.1111/nph.12347
Sitkiewicz, E., Tarnowski, K., Poznański, J., Kulma, M., Dadlez, M. (2013) Oligomerization Interface of RAGE Receptor Revealed by MS-Monitored Hydrogen Deuterium Exchange. PLoS ONE 8, e76353. doi:10.1371/journal.pone.0076353
Odolczyk, N., Fritsch, J., Norez, C., Servel, N., da Cunha, M. F., Bitam, S., Kupniewska, A., Wiszniewski, L., Colas, J., Tarnowski, K., Tondelier, D., Roldan, A., Saussereau, E. L., Melin-Heschel, P., Wieczorek, G., Lukacs, G. L., Dadlez, M., Faure, G., Herrmann, H., Ollero, M., Becq, F., Zielenkiewicz, P., Edelman, A. (2013) Discovery of novel potent ΔF508-CFTR correctors that target the nucleotide binding domain. EMBO Mol Med 5, 1484–1501. doi:10.1002/emmm.201302699
Tszyrsznic, W., Borowiec, A., Pawlowska, E., Jazwiec, R., Zochowska, D., Bartlomiejczyk, I., Zegarska, J., Paczek, L., Dadlez, M. (2013) Two rapid ultra performance liquid chromatography/tandem mass spectrometry (UPLC/MS/MS) methods with common sample pretreatment for therapeutic drug monitoring of immunosuppressants compared to immunoassay. Journal of Chromatography B 928, 9–15. doi:10.1016/j.jchromb.2013.03.014
Scifo, E., Szwajda, A., Dębski, J., Uusi-Rauva, K., Kesti, T., Dadlez, M., Gingras, A.-C., Tyynelä, J., Baumann, M. H., Jalanko, A., Lalowski, M. (2013) Drafting the CLN3 Protein Interactome in SH-SY5Y Human Neuroblastoma Cells: A Label-free Quantitative Proteomics Approach. J. Proteome Res. 12, 2101–2115. doi:10.1021/pr301125k
Giska, F., Lichocka, M., Piechocki, M., Dadlez, M., Schmelzer, E., Hennig, J., Krzymowska, M. (2013) Phosphorylation of HopQ1, a Type III Effector from Pseudomonas syringae, Creates a Binding Site for Host 14-3-3 Proteins. PLANT PHYSIOLOGY 161, 2049–2061. doi:10.1104/pp.112.209023
Jarocki, P., Podleśny, M., Pawelec, J., Malinowska, A., Kowalczyk, S., Targoński, Z. (2013) Spontaneous release of bacteriophage particles by Lactobacillus rhamnosus pen.. Journal of microbiology and biotechnology 23, 357–363.
Bartoszewicz, Z., Kondracka, A., Jaźwiec, R., Popow, M., Dadlez, M., Bednarczuk, T. (2013) Can we accurately measure the concentration of clinically relevant vitamin D metabolites in the circulation? The problems and their consequences.. Endokrynologia Polska 64, 238–245.
Karczmarski, J., Rubel, T., Mikula, M., Wolski, J., Rutkowski, A., Zagorowicz, E., Dadlez, M., Ostrowski, J. (2013) Pre-analytical-related variability influencing serum peptide profiles demonstrated in a mass spectrometry-based search for colorectal and prostate cancer biomarkers.. Acta biochimica Polonica 60, 417–425.

2012

Yang, X.-C., Sabath, I., Debski, J., Kaus-Drobek, M., Dadlez, M., Marzluff, W. F., Dominski, Z. (2012) A Complex Containing the CPSF73 Endonuclease and Other Polyadenylation Factors Associates with U7 snRNP and Is Recruited to Histone Pre-mRNA for 3'-End Processing. Molecular and Cellular Biology 33, 28–37. doi:10.1128/MCB.00653-12
Richardson, K., Denny, R., Hughes, C., Skilling, J., Sikora, J., Dadlez, M., Manteca, A., Jung, H. R., Jensen, O. N., Redeker, V., Melki, R., Langridge, J. I., Vissers, J. P. C. (2012) A Probabilistic Framework for Peptide and Protein Quantification from Data-Dependent and Data-Independent LC-MS Proteomics Experiments. OMICS: A Journal of Integrative Biology 16, 468–482. doi:10.1089/omi.2012.0019
Malinowska, A., Kistowski, M., Bakun, M., Rubel, T., Tkaczyk, M., Mierzejewska, J., Dadlez, M. (2012) Diffprot — software for non-parametric statistical analysis of differential proteomics data. Journal of Proteomics 75, 4062–4073. doi:10.1016/j.jprot.2012.05.030
Hennig, E. E., Mikula, M., Rubel, T., Dadlez, M., Ostrowski, J. (2012) Comparative kinome analysis to identify putative colon tumor biomarkers. J Mol Med 90, 447–456. doi:10.1007/s00109-011-0831-6
Bystranowska, D., Szewczuk, Z., Lisowski, M., Sitkiewicz, E., Dobryszycki, P., Ożyhar, A., Kochman, M. (2012) Intramolecular cross-linking in the native JHBP molecule. Archives of Biochemistry and Biophysics 517, 12–19. doi:10.1016/j.abb.2011.10.021
Bakun, M., Niemczyk, M., Domanski, D., Jazwiec, R., Perzanowska, A., Niemczyk, S., Kistowski, M., Fabijanska, A., Borowiec, A., Paczek, L., Dadlez, M. (2012) Urine proteome of autosomal dominant polycystic kidney disease patients. Clinical Proteomics 9, 13. doi:10.1186/1559-0275-9-13
Kowalczyk, J. E., Kawalec, M., Beręsewicz, M., Dębski, J., Dadlez, M., Zabłocka, B. (2012) Protein kinase C beta in postischemic brain mitochondria. Mitochondrion 12, 138–143. doi:10.1016/j.mito.2011.06.002

2011

Zaremba-Czogalla, M., Gagat, P., Kozioł, K., Dubińska-Magiera, M., Sikora, J., Dadlez, M., Rzepecki, R. (2011) Identification of new in vivo phosphosites on lamin Dm - the evidence of heterogeneity of phosphorylation sites in different Drosophila tissues. Nucleus 2, 478–488. doi:10.4161/nucl.2.5.17864
Rangone, H., Wegel, E., Gatt, M. K., Yeung, E., Flowers, A., Debski, J., Dadlez, M., Janssens, V., Carpenter, A. T. C., Glover, D. M. (2011) Suppression of Scant Identifies Endos as a Substrate of Greatwall Kinase and a Negative Regulator of Protein Phosphatase 2A in Mitosis. PLoS Genetics 7, e1002225. doi:10.1371/journal.pgen.1002225
Thouverey, C., Malinowska, A., Balcerzak, M., Strzelecka-Kiliszek, A., Buchet, R., Dadlez, M., Pikula, S. (2011) Proteomic characterization of biogenesis and functions of matrix vesicles released from mineralizing human osteoblast-like cells. Journal of Proteomics 74, 1123–1134. doi:10.1016/j.jprot.2011.04.005
Mikula, M., Rubel, T., Karczmarski, J., Goryca, K., Dadlez, M., Ostrowski, J. (2011) Integrating proteomic and transcriptomic high-throughput surveys for search of new biomarkers of colon tumors. Funct Integr Genomics 11, 215–224. doi:10.1007/s10142-010-0200-5
Gospodarska, E., Kupniewska-Kozak, A., Goch, G., Dadlez, M. (2011) Binding studies of truncated variants of the Aβ peptide to the V-domain of the RAGE receptor reveal Aβ residues responsible for binding. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, 592–609. doi:10.1016/j.bbapap.2011.02.011
Winiarska, B., Dwornik, A., Dębski, J., Grzelak, K., Bystranowska, D., Zalewska, M., Dadlez, M., Ożyhar, A., Kochman, M. (2011) N-linked glycosylation of G. mellonella juvenile hormone binding protein — Comparison of recombinant mutants expressed in P. pastoris cells with native protein. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, 610–621. doi:10.1016/j.bbapap.2011.02.002
Graczyk, D., Debski, J., Muszynska, G., Bretner, M., Lefebvre, O., Boguta, M. (2011) Casein kinase II-mediated phosphorylation of general repressor Maf1 triggers RNA polymerase III activation. Proceedings of the National Academy of Sciences 108, 4926–4931. doi:10.1073/pnas.1010010108
Przewloka, M. R., Venkei, Z., Bolanos-Garcia, V. M., Debski, J., Dadlez, M., Glover, D. M. (2011) CENP-C Is a Structural Platform for Kinetochore Assembly. Current Biology 21, 399–405. doi:10.1016/j.cub.2011.02.005
Kłoniecki, M., Jabłonowska, A., Poznański, J., Langridge, J., Hughes, C., Campuzano, I., Giles, K., Dadlez, M. (2011) Ion Mobility Separation Coupled with MS Detects Two Structural States of Alzheimer's Disease Aβ1–40 Peptide Oligomers. Journal of Molecular Biology 407, 110–124. doi:10.1016/j.jmb.2011.01.012

2010

Kupniewska-Kozak, A., Gospodarska, E., Dadlez, M. (2010) Intertwined Structured and Unstructured Regions of exRAGE Identified by Monitoring Hydrogen–Deuterium Exchange. Journal of Molecular Biology 403, 52–65. doi:10.1016/j.jmb.2010.08.027
Brooks, M. A., Gewartowski, K., Mitsiki, E., Létoquart, J., Pache, R. A., Billier, Y., Bertero, M., Corréa, M., Czarnocki-Cieciura, M., Dadlez, M., Henriot, V., Lazar, N., Delbos, L., Lebert, D., Piwowarski, J., Rochaix, P., Böttcher, B., Serrano, L., Séraphin, B., van Tilbeurgh, H., Aloy, P., Perrakis, A., Dziembowski, A. (2010) Systematic Bioinformatics and Experimental Validation of Yeast Complexes Reduces the Rate of Attrition during Structural Investigations. Structure 18, 1075–1082. doi:10.1016/j.str.2010.08.001
Mikula, M., Gaj, P., Dzwonek, K., Rubel, T., Karczmarski, J., Paziewska, A., Dzwonek, A., Bragoszewski, P., Dadlez, M., Ostrowski, J. (2010) Comprehensive Analysis of the Palindromic Motif TCTCGCGAGA: A Regulatory Element of the HNRNPK Promoter. DNA Research 17, 245–260. doi:10.1093/dnares/dsq016
Wawer, I., Bucholc, M., Astier, J., Anielska‑Mazur, A., Dahan, J., Kulik, A., Wysłouch‑Cieszynska, A., Zaręba‑Kozioł, M., Krzywinska, E., Dadlez, M., Dobrowolska, G., Wendehenne, D. (2010) Regulation of Nicotiana tabacum osmotic stress-activated protein kinase and its cellular partner GAPDH by nitric oxide in response to salinity . Biochemical Journal 429, 73–83. doi:10.1042/BJ20100492
Kedracka-Krok, S., Fic, E., Jankowska, U., Jaciuk, M., Gruca, P., Papp, M., Kusmider, M., Solich, J., Debski, J., Dadlez, M., Dziedzicka-Wasylewska, M. (2010) Effect of chronic mild stress and imipramine on the proteome of the rat dentate gyrus. Journal of Neurochemistry 113, 848–859. doi:10.1111/j.1471-4159.2010.06652.x
Rózga, M., Kłoniecki, M., Dadlez, M., Bal, W. (2010) A Direct Determination of the Dissociation Constant for the Cu(II) Complex of Amyloid β 1−40 Peptide. Chemical Research in Toxicology 23, 336–340. doi:10.1021/tx900344n

2009

Arnaiz, O., Malinowska, A., Klotz, C., Sperling, L., Dadlez, M., Koll, F., Cohen, J. (2009) Cildb: a knowledgebase for centrosomes and cilia. Database 2009, bap022–bap022. doi:10.1093/database/bap022
Sikora, J., Towpik, J., Graczyk, D., Kistowski, M., Rubel, T., Poznanski, J., Langridge, J., Hughes, C., Dadlez, M., Boguta, M. (2009) Yeast prion [PSI+] lowers the levels of mitochondrial prohibitins. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1793, 1703–1709. doi:10.1016/j.bbamcr.2009.08.003
Bakun, M., Karczmarski, J., Poznanski, J., Rubel, T., Rozga, M., Malinowska, A., Sands, D., Hennig, E., Oledzki, J., Ostrowski, J., Dadlez, M. (2009) An integrated LC-ESI-MS platform for quantitation of serum peptide ladders. Application for colon carcinoma study. PROTEOMICS - CLINICAL APPLICATIONS 3, 932–946. doi:10.1002/prca.200800111
Konopka-Postupolska, D., Clark, G., Goch, G., Debski, J., Floras, K., Cantero, A., Fijolek, B., Roux, S., Hennig, J. (2009) The Role of Annexin 1 in Drought Stress in Arabidopsis. PLANT PHYSIOLOGY 150, 1394–1410. doi:10.1104/pp.109.135228
Trudel, S., Kelly, M., Fritsch, J., Nguyen-Khoa, T., Thérond, P., Couturier, M., Dadlez, M., Debski, J., Touqui, L., Vallée, B., Ollero, M., Edelman, A., Brouillard, F. (2009) Peroxiredoxin 6 Fails to Limit Phospholipid Peroxidation in Lung from Cftr-Knockout Mice Subjected to Oxidative Challenge. PLoS ONE 4, e6075. doi:10.1371/journal.pone.0006075
Jagusztyn-Krynicka, E. K., Dadlez, M., Grabowska, A., Roszczenko, P. (2009) Proteomic technology in the design of new effective antibacterial vaccines. Expert Review of Proteomics 6, 315–330. doi:10.1586/epr.09.47
Gambin, A., Szczurek, E., Dutkowski, J., Bakun, M., Dadlez, M. (2009) Classification of peptide mass fingerprint data by novel no-regret boosting method. Computers in Biology and Medicine 39, 460–473. doi:10.1016/j.compbiomed.2009.03.006
Petrakis, S., Malinowska, A., Dadlez, M., Sklaviadis, T. (2009) [u'Identification of proteins co-purifying with scrapie infectivity']. [u'Journal of Proteomics'] 72, 690–694. doi:10.1016/j.jprot.2009.01.025
Rózga, M., Protas, A. M., Jabłonowska, A., Dadlez, M., Bal, W. (2009) The Cu(ii) complex of Aβ40 peptide in ammonium acetate solutions. Evidence for ternary species formation. Chemical Communications, 1374. doi:10.1039/b819616h
Kowalczyk, J. E., Beręsewicz, M., Gajkowska, B., Zabłocka, B. (2009) Association of protein kinase C delta and phospholipid scramblase 3 in hippocampal mitochondria correlates with neuronal vulnerability to brain ischemia. Neurochemistry International 55, 157–163. doi:10.1016/j.neuint.2009.01.009
Havrylov, S., Rzhepetskyy, Y., Malinowska, A., Drobot, L., Redowicz, M. (2009) Proteins recruited by SH3 domains of Ruk/CIN85 adaptor identified by LC-MS/MS. Proteome Science 7, 21. doi:10.1186/1477-5956-7-21

2008

Rutkowska-Wlodarczyk, I., Stepinski, J., Dadlez, M., Darzynkiewicz, E., Stolarski, R., Niedzwiecka, A. (2008) Structural Changes of eIF4E upon Binding to the mRNA 5′ Monomethylguanosine and Trimethylguanosine Cap † . Biochemistry 47, 2710–2720. doi:10.1021/bi701168z
Gogendeau, D., Klotz, C., Arnaiz, O., Malinowska, A., Dadlez, M., de Loubresse, N. G., Ruiz, F., Koll, F., Beisson, J. (2008) Functional diversification of centrins and cell morphological complexity. Journal of Cell Science 121, 65–74. doi:10.1242/jcs.019414
Balcerzak, M., Malinowska, A., Thouverey, C., Sekrecka, A., Dadlez, M., Buchet, R., Pikula, S. (2008) Proteome analysis of matrix vesicles isolated from femurs of chicken embryo. PROTEOMICS 8, 192–205. doi:10.1002/pmic.200700612

2007

Rózga, M., Kłoniecki, M., Jabłonowska, A., Dadlez, M., Bal, W. (2007) The binding constant for amyloid Aβ40 peptide interaction with human serum albumin. Biochemical and Biophysical Research Communications 364, 714–718. doi:10.1016/j.bbrc.2007.10.080
Ostrowski, J., Mikula, M., Karczmarski, J., Rubel, T., Wyrwicz, L. S., Bragoszewski, P., Gaj, P., Dadlez, M., Butruk, E., Regula, J. (2007) Molecular defense mechanisms of Barrett’s metaplasia estimated by an integrative genomics. Journal of Molecular Medicine 85, 733–743. doi:10.1007/s00109-007-0176-3
Gambin, A., Dutkowski, J., Karczmarski, J., Kluge, B., Kowalczyk, K., Ostrowski, J., Poznański, J., Tiuryn, J., Bakun, M., Dadlez, M. (2007) Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures. International Journal of Mass Spectrometry 260, 20–30. doi:10.1016/j.ijms.2006.06.011

2006

Burza, A. M., Pekala, I., Sikora, J., Siedlecki, P., Malagocki, P., Bucholc, M., Koper, L., Zielenkiewicz, P., Dadlez, M., Dobrowolska, G. (2006) Nicotiana tabacum Osmotic Stress-activated Kinase Is Regulated by Phosphorylation on Ser-154 and Ser-158 in the Kinase Activation Loop. Journal of Biological Chemistry 281, 34299–34311. doi:10.1074/jbc.M601977200
Mikula, M., Dzwonek, A., Karczmarski, J., Rubel, T., Dadlez, M., Wyrwicz, L. S., Bomsztyk, K., Ostrowski, J. (2006) Landscape of the hnRNP K protein–protein interactome. PROTEOMICS 6, 2395–2406. doi:10.1002/pmic.200500632
Mikula, M., Karczmarski, J., Dzwonek, A., Rubel, T., Hennig, E., Dadlez, M., Bujnicki, J. M., Bomsztyk, K., Ostrowski, J. (2006) Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1764, 299–306. doi:10.1016/j.bbapap.2005.12.004

2005

Hinzpeter, A. (2005) Association between Hsp90 and the ClC-2 chloride channel upregulates channel function. AJP: Cell Physiology 290, C45–C56. doi:10.1152/ajpcell.00209.2005

2004

Davezac, N., Tondelier, D., Lipecka, J., Fanen, P., Demaugre, F., Debski, J., Dadlez, M., Schrattenholz, A., Cahill, M. A., Edelman, A. (2004) Global proteomic approach unmasks involvement of keratins 8 and 18 in the delivery of cystic fibrosis transmembrane conductance regulator (CFTR)/ΔF508-CFTR to the plasma membrane. PROTEOMICS 4, 3833–3844. doi:10.1002/pmic.200400850
Jablonowska, A., Bakun, M., Kupniewska-Kozak, A., Dadlez, M. (2004) Alzheimer's Disease Aβ Peptide Fragment 10–30 Forms a Spectrum of Metastable Oligomers with Marked Preference for N to N and C to C Monomer Termini Proximity. Journal of Molecular Biology 344, 1037–1049. doi:10.1016/j.jmb.2004.09.083
Zuberek, J., Jemielity, J., Jablonowska, A., Stepinski, J., Dadlez, M., Stolarski, R., Darzynkiewicz, E. (2004) Influence of Electric Charge Variation at Residues 209 and 159 on the Interaction of eIF4E with the mRNA 5‘ Terminus † . Biochemistry 43, 5370–5379. doi:10.1021/bi030266t
Dębski, J., Wysłouch-Cieszyńska, A., Dadlez, M., Grzelak, K., Kłudkiewicz, B., Kołodziejczyk, R., Lalik, A., Ożyhar, A., Kochman, M. (2004) Positions of disulfide bonds and N-glycosylation site in juvenile hormone binding protein. Archives of Biochemistry and Biophysics 421, 260–266. doi:10.1016/j.abb.2003.10.019

2003

Grzelak, K., Kłudkiewicz, B., Kolomiets, L. I., Dȩbski, J., Dadlez, M., Lalik, A., Ożyhar, A., Kochman, M. (2003) Overexpression of juvenile hormone binding protein in bacteria and Pichia pastoris. Protein Expression and Purification 31, 173–180. doi:10.1016/s1046-5928(03)00192-x
Dominski, Z., Yang, X.-. cui ., Kaygun, H., Dadlez, M., Marzluff, W. F. (2003) A 3′ Exonuclease that Specifically Interacts with the 3′ End of Histone mRNA. Molecular Cell 12, 295–305. doi:10.1016/s1097-2765(03)00278-8
ZUBEREK, J. (2003) Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: Intein-mediated protein ligation strategy to obtain phosphorylated protein. RNA 9, 52–61. doi:10.1261/rna.2133403
Kurowski, M. A., Sasin, J. M., Feder, M., Debski, J., Bujnicki, J. M. (2003) Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures. BMC Bioinformatics 4, 9. doi:10.1186/1471-2105-4-9

2002

Bujnicki, J. M., Leach, R. A., Debski, J., Rychlewski, L. (2002) Bioinformatic analyses of the tRNA: (guanine 26, N2,N2)-dimethyltransferase (Trm1) family.. Journal of molecular microbiology and biotechnology 4, 405–415.
Niedzwiecka, A., Marcotrigiano, J., Stepinski, J., Jankowska-Anyszka, M., Wyslouch-Cieszynska, A., Dadlez, M., Gingras, A.-C., Mak, P., Darzynkiewicz, E., Sonenberg, N., Burley, S. K., Stolarski, R. (2002) Biophysical Studies of eIF4E Cap-binding Protein: Recognition of mRNA 5′ Cap Structure and Synthetic Fragments of eIF4G and 4E-BP1 Proteins. Journal of Molecular Biology 319, 615–635. doi:10.1016/S0022-2836(02)00328-5
Buczek, O. (2002) Analysis of serine proteinase-inhibitor interaction by alanine shaving. Protein Science 11, 806–819. doi:10.1110/ps.3510102

2001

Kiczak, L., Kasztura, M., Koscielska-Kasprzak, K., Dadlez, M., Otlewski, J. (2001) Selection of potent chymotrypsin and elastase inhibitors from M13 phage library of basic pancreatic trypsin inhibitor (BPTI). Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology 1550, 153–163. doi:10.1016/s0167-4838(01)00282-5

2000

Grzesiak, A., Krokoszynska, I., Krowarsch, D., Buczek, O., Dadlez, M., Otlewski, J. (2000) Inhibition of Six Serine Proteinases of the Human Coagulation System by Mutants of Bovine Pancreatic Trypsin Inhibitor. Journal of Biological Chemistry 275, 33346–33352. doi:10.1074/jbc.m006085200
Grzesiak, A., Helland, R., Smalås, A. O., Krowarsch, D., Dadlez, M., Otlewski, J. (2000) Substitutions at the P1′ position in BPTI strongly affect the association energy with serine proteinases. Journal of Molecular Biology 301, 205–217. doi:10.1006/jmbi.2000.3935

1999

Krowarsch, D., Dadlez, M., Buczek, O., Krokoszynska, I., Smalas, A. O., Otlewski, J. (1999) Interscaffolding additivity: binding of P1 variants of bovine pancreatic trypsin inhibitor to four serine proteases. Journal of Molecular Biology 289, 175–186. doi:10.1006/jmbi.1999.2757
Helland, R., Otlewski, J., Sundheim, O., Dadlez, M., Smalås, A. O. (1999) The crystal structures of the complexes between bovine β-trypsin and ten P1 variants of BPTI. Journal of Molecular Biology 287, 923–942. doi:10.1006/jmbi.1999.2654
Zdanowski, K., Dadlez, M. (1999) Stability of the residual structure in unfolded BPTI in different conditions of temperature and solvent composition measured by disulphide kinetics and double mutant cycle analysis. Journal of Molecular Biology 287, 433–445. doi:10.1006/jmbi.1999.2622
Kiczak, L., Koscielska, K., Otlewski, J., Czerwinski, M., Dadlez, M. (1999) Phage display selection of P1 mutants of BPTI directed against five different serine proteinases.. Biological chemistry 380, 101–105. doi:10.1515/BC.1999.014